Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29130 164 / 9e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023356 [exp] 249 / 5e-87 AT3G29130 162 / 9e-53 unknown protein Lus10000252 [exp] 249 / 5e-87 AT3G29130 162 / 9e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098200 [exp] 179 / 1e-59 AT3G29130 142 / 4e-45 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10241 [flax] [poplar] KxDL Uncharacterized conserved protein
Representative CDS sequence Show only first row Show all	>Lus10038450 pacid=23158233 polypeptide=Lus10038450 locus=Lus10038450.g ID=Lus10038450.BGIv1.0 annot-version=v1.0 ATGGAGCGAAGTGAGGAGAAGCAATCCATTGCAGAGGCTTCCAAGGAGGTTTCTCGAGAGTTCAAAACCCTGATCAACGGCCAAGAGTTGGATACCCTCA AGCAATCCCAGCATCTCATACTGGGAAGGTTGCAGGACAGTAATGCAGTCTTGTCTCATTTTAACGATTACTCAGAAAACTGCTTCACAGAGGTTTCTGG TGATTTTTATAAGAACACTCGGCTGCTCAAGTCTATGAAGGCTGATCTTGATTACATATTTCTGAAGCTTAGAACTATGAAGTCAAAAATCTCGGCTGTG TATCCTGATGCATTTACAGACGAATCAGGGAAACAAGTAGAGGATAGAAGACCGGACCTTGAAGCACCTATGGAACCCTAG
AA sequence Show only first row Show all	>Lus10038450 pacid=23158233 polypeptide=Lus10038450 locus=Lus10038450.g ID=Lus10038450.BGIv1.0 annot-version=v1.0 MERSEEKQSIAEASKEVSREFKTLINGQELDTLKQSQHLILGRLQDSNAVLSHFNDYSENCFTEVSGDFYKNTRLLKSMKADLDYIFLKLRTMKSKISAV YPDAFTDESGKQVEDRRPDLEAPMEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29130			unknown protein		Lus10038450 [exp]	0	1
AT5G53650			unknown protein		Lus10032946 [exp]	2.4	0.8197
AT5G40080			Mitochondrial ribosomal protei...		Lus10034241 [exp]	7.1	0.7271
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	10.1	0.7702
AT5G64180			unknown protein		Lus10008120 [exp]	10.8	0.7889
AT1G30475			unknown protein		Lus10027131 [exp]	11.7	0.7323
AT1G77350			unknown protein		Lus10018864 [exp]	13.4	0.7369
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000852 [exp]	17.1	0.6931
AT5G24165			unknown protein		Lus10014921 [exp]	22.4	0.7136
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	23.7	0.6977
AT4G21720			unknown protein		Lus10028771 [exp]	26.4	0.7018

Compare expression of checked genes

Lus10038450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.