Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30480 323 / 3e-108 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) AT4G36690 47 / 2e-05 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023355 [exp] 456 / 2e-160 AT1G30480 470 / 3e-166 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Lus10037299 [exp] 50 / 2e-06 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10035713 [exp] 45 / 7e-05 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10024026 [exp] 45 / 7e-05 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10005059 [exp] 44 / 0.0003 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 44 / 0.0003 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 43 / 0.0004 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10041725 [exp] 43 / 0.0004 AT4G36690 672 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10027830 [exp] 43 / 0.0005 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098100 [exp] 353 / 2e-120 AT1G30480 348 / 1e-118 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.001G372600 [exp] 344 / 7e-117 AT1G30480 327 / 5e-110 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.011G050400 [exp] 55 / 7e-08 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.004G040900 [exp] 52 / 4e-07 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10038451 pacid=23158366 polypeptide=Lus10038451 locus=Lus10038451.g ID=Lus10038451.BGIv1.0 annot-version=v1.0 ATGTTCGGCGGATTGTATGGAGACCTCCCACCGCCGTCCAAGGCAGCGGAAGAGGAGAAATCCAGCGCAAATGCTTCCGCCGCGTGGTCATCCTCCACCC TAATGGCGCCGCCGACGCTCCGTAAATCGTCCACAGCCTTCGCACCTCAGATAATTCTCAAATCCACGAGCAAAACGAAGCCGAGCTCTGCAACCAAGGT CACTTTAGTGACGTCGTCACCCGCGATTCCGGCGGCGAAGCGAGAGGAGGTGGCTCAACAACCGGCACTGGTGGGAGTTCAGTCGCTTGTGATTGAGGAG TACGATCCTGCTAGGCCGAACGACTACGAAGATTACAGGCGGGAGAAGAAGCGGAAGGCGTTGGAGACGGAGAGGCTGAGGGAGCTGGAGAGGAGGAGGC AAGAAGAGGAGGACAGGGAGAGGGTAGAGAAGGAAGAGAGGGAGAGGGATAGAGAAAGGGACAAGAATATCTCAGGGGAGGAAGCATGGAGGAGACGAGC GGCGATGAGCGGCGGAGCTGTGCCGAGGACGCCGTCGCCGCCTAGTGGCGGGGATGGAGGATTTAGTATTGAGAAATCGGAGACGGTTGGGTTAGGAGTT GGAGCAGGTGGGCAAATGACTGCTGCTCAGAGGATGATGGCTAAGATGGGATGGAAAGAAGGGCAAGGGCTTGGGAAGCAGGAGCAGGGAATTACAACTC CGTTGATGGCTAAGAAGACTGATCGTCGAGCTGGGGTTATTGTGAACGCCAGTGCAAATAAGCAGCAGCAATCGTCGGAGAAGAAGGTGAAGAGTGTAAA TCTTAACGGACCTCCAACTAGGGTTCTACTGCTCCGAAACATGATGCTTGTTCTTCCTTCGATGGCATATTTAGCTGGGTTTTTTATGGTTGGTCCTGGT GAAGTGGACGATGAGCTAGAGGATGAAGTCGCTTCAGAGTGCGCAAAGTACGGGACGGTGACACGGGTTCTCATATTCGAGATCACAGAACCAAACTTCC CTCGACACGAAGCTGTTCGGATATTTATACAGTTTAAGAGGTCGGAAGAAACAACTAAGGCATTAGTAGATCTAGACGGCCGTTACTTTGGGGGTAACAC GGTCAGAGCAACGTTCTACGACGAGGAGAAATTCAACAGTAACGAGTTAGCCCCACTGCCTGGAGAAATTCCAGGTTTTTGA
AA sequence Show only first row Show all	>Lus10038451 pacid=23158366 polypeptide=Lus10038451 locus=Lus10038451.g ID=Lus10038451.BGIv1.0 annot-version=v1.0 MFGGLYGDLPPPSKAAEEEKSSANASAAWSSSTLMAPPTLRKSSTAFAPQIILKSTSKTKPSSATKVTLVTSSPAIPAAKREEVAQQPALVGVQSLVIEE YDPARPNDYEDYRREKKRKALETERLRELERRRQEEEDRERVEKEERERDRERDKNISGEEAWRRRAAMSGGAVPRTPSPPSGGDGGFSIEKSETVGLGV GAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASANKQQQSSEKKVKSVNLNGPPTRVLLLRNMMLVLPSMAYLAGFFMVGPG EVDDELEDEVASECAKYGTVTRVLIFEITEPNFPRHEAVRIFIQFKRSEETTKALVDLDGRYFGGNTVRATFYDEEKFNSNELAPLPGEIPGF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10038451 [exp]	0	1
					Lus10010972 [exp]	1.7	0.8982
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	2.0	0.8812
AT1G16210			unknown protein		Lus10022649 [exp]	3.2	0.8862
AT1G61040		VIP5	vernalization independence 5, ...		Lus10018476 [exp]	3.5	0.8859
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025406 [exp]	5.0	0.8650
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10042268 [exp]	5.3	0.8405
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	9.5	0.8218
AT3G05670			RING/U-box protein (.1)		Lus10031468 [exp]	9.7	0.8159
AT5G41020	MYB		myb family transcription facto...		Lus10024036 [exp]	10.6	0.8382
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	13.2	0.8441

Compare expression of checked genes

Lus10038451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.