Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30470 788 / 0 SIT4 phosphatase-associated family protein (.1.2.3) AT1G07990 603 / 0 SIT4 phosphatase-associated family protein (.1) AT3G45190 601 / 0 SIT4 phosphatase-associated family protein (.1) AT2G28360 599 / 0 SIT4 phosphatase-associated family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023354 [exp] 1238 / 0 AT1G30470 918 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10037400 [exp] 612 / 0 AT1G07990 976 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10016088 [exp] 585 / 0 AT3G45190 840 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10021468 [exp] 516 / 6e-173 AT3G45190 851 / 0.0 SIT4 phosphatase-associated family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014700 [exp] 672 / 0 AT1G07990 1019 / 0.0 SIT4 phosphatase-associated family protein (.1) Potri.004G211500 [exp] 661 / 0 AT1G07990 991 / 0.0 SIT4 phosphatase-associated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04499 [flax] [poplar] SAPS SIT4 phosphatase-associated protein
Representative CDS sequence Show only first row Show all	>Lus10038452 pacid=23158173 polypeptide=Lus10038452 locus=Lus10038452.g ID=Lus10038452.BGIv1.0 annot-version=v1.0 ATGTCTTGTCTAGTCCATGGAAACGAACACAGGGCTTCTCATATATTCTGTTCTATCTTCAGTATCCTTCAGGAGTTTTATGTTGTGCCAATTTTTGTCA CCATGTATCAGTCAGTCCTTCTTGTGTCTATGCCTTTACGAGAGAAGGCTCAGGTGGAGAAGTTGATACAATATATTGTAGAAGAGCCTACCGAGGATGC TGAGAAACAACGAACTTTCAAGCTCCCCTTTATTGCTTGTGAGATTTTTACTTGTGAAGTTGATATCATTCTTAAAACGTTGGTAGAGGATGAGGAGTTG ATGGAATTGTTGTTTTCGTTCTTTGAACCAACCCATTCCCATGGGACTCTCTTAGCAGGTTACTTCAGCAAGGTTTGCATATGCCTCTTGCTTCGGAAGA CCGTTCCTTTCTTAAATTATGTCAAGGCTCATCAGGAAATTTTTGGAAAACTGGTTGACCTTATCGGTATCACCTCTATCATGGAGGTGTTAATTCGGTT AATTGGTGCTGATGAACATTTGTACTCGAGTTACACAGATGCCATGCAGTGGATACATGATACAAATGTGTTAGAGTTGATTGTAGACAAGTTCAGCTCA TCTGATTTTCCTGAGGTGCATGCTAATACAGCTGAGACCCTTTGTGCGATAACTCGATTTGCACCCCCTGGTCTAGCTGCCAAAATATCAAGCCCGAATT TCATTGGAAGATTGTTTCGACATGCTTTAGAGGAATCAAGGCCGAAATCTGTACTAGTGAACTCGCTATCTATCTGTATATGTTTGTTAGACCCTAGGAG GCTAAATTTGGGTACATATCATACTTATAATCGCCAGCTGAATCAAGGAACTGCTGTCAGTGCTAGTCCAACCACCGTCGAAGGGATGCTGGAAAGCTTA GGTGACCTTTTGAAGCTCTTAGATGTTTCATCGACAGACAATGTGTTGTTAACTACGTATGGAAAGCTGCAGCCACCTCTTGGCAAACACCGCTTAAAGA TTGTGGAGTTCATTTCAGTCATCCTGACCATTGGCAGTGAAGCTGCTGAGAAGGAACTAATCCGACTTGGAGCCATCCAACGTATATTAGACTTATTTTT TGATTATCCCTACAATAATTTCTTGCACCACCACGTAGAGAGCATAATATTTTCTTGTTTGGAGAGCAAGAATGGCTGTCTTTGCGAACATCTTCTTCGT GATTGTTGTCTTTTGACGAAAATACTTGAAGCCGAAACGAAAATCACATTGACAACTGACTCAAGCAAGCCTACTGTTCCTGCTGAGGGTAGATCGCCTC CTAGGATAGGGAATATCGGACACTTGACACGCATATCTAACAAGCTGGTTCAGTTGGCCAGTAATAGCTCTGCTATTCAAGCGCTTTTGCAGGAAAACAA TCAATGGGTTGAGTGGCAGAGTGTCCTGACAAAGCGTAATGTGGTCGAAAATGTCCATCAGTGGGGCTGTGGGAGGCCAACTGCTCTGCAAGACCGTAGA GATAGTGATGACGACGATTATCAAGATAGAGATTATGATGTTGCAGCTCTAGCAAACAATTTAAGTCAAGCATTCCAATATGGTATTTACAACAACGATG ACATGAATGAGGTGCGCGGTTCACTTGAAAGAGATGATGAGGATGTCTACTTCGATGATGAATCTGCTGAAGTAGTAATATCTTCTTTACGTTTGGGTGA TGACAAGGACAGCAGTTCGCTATTTACAAACTCGAATTGGTTTGCTTTCGAGGATGACAGAGCTGCCGCCAACGAGCAGTCCGATGGAAGCCTCGCTTCC TTGCTGAACAACGAGGACGGGACGGGTGCTGCTGCCGGTGATGCCGGCAACAAAGATGACGACTTGGGCGACACAGCCACATCTTCAACATCTGTCGAGC CCAAGCCGGACGAGAACATTCTTCCCAAAGATTCAAATGAAGCCGGAACCGTGACAGATGACGCACCATCATCTGCTTGGGTGGAGTGGAGAGAAACACC AGATGTCAACGATTCGCCTGGCTCGAAGCAACCTCCAGCACCAAGCAGTGAGCATCAAGTCGACGAAGGAAATTCGGAGCCTGGCAAGCAGCTAACTACT GATGTTGCTTTAATAGAGAGTGAGTCTGCTTCTGCTGAAGGCCCGACATCAGACTCGGCCAACGAGAACCCGACTTCTAGCTCTTCGGCGTCACCCGTTG GACCAGACCCCAGTAGTTATGTTGATGCTGAGTCTCCGGTAGTAACCACCGAAGATAAAGCCGGAGAAGTGGTTAAAGATGATGGTGGTGATGATGAGGA GGATGTGGAGAAGGAGAAGAGCAAGTAA
AA sequence Show only first row Show all	>Lus10038452 pacid=23158173 polypeptide=Lus10038452 locus=Lus10038452.g ID=Lus10038452.BGIv1.0 annot-version=v1.0 MSCLVHGNEHRASHIFCSIFSILQEFYVVPIFVTMYQSVLLVSMPLREKAQVEKLIQYIVEEPTEDAEKQRTFKLPFIACEIFTCEVDIILKTLVEDEEL MELLFSFFEPTHSHGTLLAGYFSKVCICLLLRKTVPFLNYVKAHQEIFGKLVDLIGITSIMEVLIRLIGADEHLYSSYTDAMQWIHDTNVLELIVDKFSS SDFPEVHANTAETLCAITRFAPPGLAAKISSPNFIGRLFRHALEESRPKSVLVNSLSICICLLDPRRLNLGTYHTYNRQLNQGTAVSASPTTVEGMLESL GDLLKLLDVSSTDNVLLTTYGKLQPPLGKHRLKIVEFISVILTIGSEAAEKELIRLGAIQRILDLFFDYPYNNFLHHHVESIIFSCLESKNGCLCEHLLR DCCLLTKILEAETKITLTTDSSKPTVPAEGRSPPRIGNIGHLTRISNKLVQLASNSSAIQALLQENNQWVEWQSVLTKRNVVENVHQWGCGRPTALQDRR DSDDDDYQDRDYDVAALANNLSQAFQYGIYNNDDMNEVRGSLERDDEDVYFDDESAEVVISSLRLGDDKDSSSLFTNSNWFAFEDDRAAANEQSDGSLAS LLNNEDGTGAAAGDAGNKDDDLGDTATSSTSVEPKPDENILPKDSNEAGTVTDDAPSSAWVEWRETPDVNDSPGSKQPPAPSSEHQVDEGNSEPGKQLTT DVALIESESASAEGPTSDSANENPTSSSSASPVGPDPSSYVDAESPVVTTEDKAGEVVKDDGGDDEEDVEKEKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30470			SIT4 phosphatase-associated fa...		Lus10038452 [exp]	0	1
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	13.3	0.8951
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	13.7	0.8959
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10035243 [exp]	16.9	0.8679
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	16.9	0.8881
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	19.1	0.8933
AT4G17140			pleckstrin homology (PH) domai...		Lus10003007 [exp]	21.1	0.8888
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10015638 [exp]	21.5	0.8664
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10015475 [exp]	25.9	0.8669
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	27.8	0.8863
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	31.3	0.8845

Compare expression of checked genes

Lus10038452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.