Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55390 432 / 6e-139 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) AT5G48090 168 / 4e-45 ELP1 EDM2-like protein1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023353 [exp] 934 / 0 AT5G55390 890 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10001729 [exp] 319 / 6e-98 AT5G55390 622 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359900 [exp] 534 / 5e-178 AT5G55390 915 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12047 [flax] [poplar] DNMT1-RFD Cytosine specific DNA methyltransferase replication foci domain
Representative CDS sequence Show only first row Show all	>Lus10038453 pacid=23158306 polypeptide=Lus10038453 locus=Lus10038453.g ID=Lus10038453.BGIv1.0 annot-version=v1.0 ATGTCATCATCGGACGACGAGGCGGATGCTGGCCCGAAGTCCGTTTCGGAGTACCATTTTGAGGATGATGAACAAGAGCCAATTTCCTTCTCTGTACTTC CCGTCAAATGGAGCGACGACGAGGATGCTCCTGATGGCGTTCAGCAGATCTTCTTGCGTGGAGCTGCCGACTGTGGCCTCCAGACGGTATTCAAGCCCGT CAAGGCGTGGAAGTTTGATCTGTCAAATGCTTTTACTGAGATATCTGTCCTAACCAAGGACAATTCATGGATTAAATTGCTGAAGCCGAGGAAGAGCCTT GAGGCGATTGTTAGGACTACCTTGGTAACTGTACAATTCCTCCATTTGGTGAAGAGGAATCCAGATTCGTCAGGAAAACCCATATGGGAAAATTTGTCCA AGACATTCAGTGCATACGAAGTTAAACCTTCTCAGGATGATTTGATAGACTACATCGATTTAATTAGTGAAGCTGTTAGTAGGGATGATTCGTTGAAGAG CAAGTTCTTGCTCTCATTTATGGAGGGGAAGGCGAGAAAGAAGACAATGGCTGATAAGGATAAGCAAGCTGTGAAGATGTCTGGATTTTTGGTTGATGAC ATCGATGAAGGTATCTTTGAAGCTTCCGAGGAAGAGGATGATCCAAATGATGATTTGTTTGATTCAGTTTGTGCATTTTGTGACAATGGTGGGGAGATCT TATGCTGTGAAGGCAAGTGCATGAGAGCATTTCATGCTACTAAGGAGGATGGTGAAGAATCTGTTTGCCAGTCGTTGGAGCTATCTAAGAAAGAAGTTAA TGAAATGCAGAACTTTGTCTGTAAGAATTGTGAGTCTGAGCAGCATCAGTGCTTTGCTTGTGGAAACTTGGGTTGCTCAAAGAAATCTTCTGATGCTGAG GTTTTCCGTTGTGCCAATGCCACCTGTGGTTATTTTTATCACCCACATTGTGTTGCAAAATTACTTCACCCTGGGAATAAGGTTGCTGCAGAGGAGCTTG AGAAAAAGATAGCTACCCGAGAGAGTTTCTTGTGTCCCATGCACAAGTGCTGCCATTGTAACCAAGGAGAGAACAAGGAGATTCCGGACTTGCAATTTGC TGTCTGCAGGCGGTGTCCAACAGCATACCATTCAAAATGCCTGCCAAAGTCGGAGATTCATATTGCAAAAGATGACGATGACGCAGATGATGGTGAAGAA GGAGAGGATATAGTAGATAGAGGATGGAAGAATCTGTTACCAAACCGAATATTGCTATATTGCTTGAAGCACACGATTGAGGAGCACCTAGGAACTCCAG CCAGAGATCATATAAAATTTCCTGGTTCGGAAGTCAAAAGAAGTACCTTTGAAGAAAAGATGAGCAAAAGTAAAACGTTTCTGGAGAAATACACGACTAT AGCTGATTCTTCATCTGGGAAGATCGATTCTAAAGGTTGGACGCTTAATTCTTTATCTTCAAGGCAACAAGAAAGCATTGACAAAGGCAAGAAGAAGTTG TCTTCACATATTCTTTTAAGAGTGCTGGAACGGGCGACCCTTCTATGA
AA sequence Show only first row Show all	>Lus10038453 pacid=23158306 polypeptide=Lus10038453 locus=Lus10038453.g ID=Lus10038453.BGIv1.0 annot-version=v1.0 MSSSDDEADAGPKSVSEYHFEDDEQEPISFSVLPVKWSDDEDAPDGVQQIFLRGAADCGLQTVFKPVKAWKFDLSNAFTEISVLTKDNSWIKLLKPRKSL EAIVRTTLVTVQFLHLVKRNPDSSGKPIWENLSKTFSAYEVKPSQDDLIDYIDLISEAVSRDDSLKSKFLLSFMEGKARKKTMADKDKQAVKMSGFLVDD IDEGIFEASEEEDDPNDDLFDSVCAFCDNGGEILCCEGKCMRAFHATKEDGEESVCQSLELSKKEVNEMQNFVCKNCESEQHQCFACGNLGCSKKSSDAE VFRCANATCGYFYHPHCVAKLLHPGNKVAAEELEKKIATRESFLCPMHKCCHCNQGENKEIPDLQFAVCRRCPTAYHSKCLPKSEIHIAKDDDDADDGEE GEDIVDRGWKNLLPNRILLYCLKHTIEEHLGTPARDHIKFPGSEVKRSTFEEKMSKSKTFLEKYTTIADSSSGKIDSKGWTLNSLSSRQQESIDKGKKKL SSHILLRVLERATLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	0	1
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	5.2	0.9260
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	9.9	0.9095
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	11.2	0.8958
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	11.3	0.9235
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	13.1	0.9219
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	15.1	0.9202
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	15.2	0.9069
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	15.3	0.9168
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	17.0	0.8876
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	17.1	0.8949

Compare expression of checked genes

Lus10038453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.