Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55390 169 / 7e-45 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) AT5G48090 82 / 3e-16 ELP1 EDM2-like protein1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023353 [exp] 449 / 7e-145 AT5G55390 890 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10001729 [exp] 100 / 9e-22 AT5G55390 622 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10002269 [exp] 91 / 1e-20 AT5G55390 174 / 8e-50 ENHANCED DOWNY MILDEW 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359900 [exp] 191 / 3e-52 AT5G55390 915 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038454 pacid=23158387 polypeptide=Lus10038454 locus=Lus10038454.g ID=Lus10038454.BGIv1.0 annot-version=v1.0 ATGAACACGAGTTCTGGTGAAAATCTTGCAAAGCAAGAAAGAAATGAGAGTAGGGTAAATAGAGCATCTACCAACACAAATGCTCAAAAGAAGCCGGGTA TAGATCTGCCAGAATTAGATGCCGACTCAGAGAGGAGACTTTTAGCCTTCATCAAAAGTGCCTCTTCTTCAGTATCAATGGCGGATATGGTGAAAAAGTA TAAAGCACCTTCTACACATATATATTCGTCTAGGACTGCTGTGAACAAGACCATTACTGTGGGGAAGGTGGAAGGTGCTGTTGAGGCTGTTAGGACAGCT GCAAAGAAACTGGATAACAAATGTAGTGTTGAGGATGCAAAAGCTGTATGTGAACCAGGAGTTCTGGGCCAGGTTTTCAAGTGGAAGAATAAGCTGAGGG TATATCTTGCTCCATTCCTGCATGGCATGCGGTATACTTCTTTTGGACGGCATTTTACTAAACCAGAAAAACTTGCGGAGATTGTCAATAAGCTTGATGC ACAAAAGCTTGAAAGAGGAGCATCAGAGAAATCTTCTGGGGATAGCCAAAAAGGAAAAAAGCTTCCTAGAAGATCTACTCCAATTCCATCGCCTTCGGAG ACTAGGGAATCGGGTAATCGATCTTGGGAGCATGAAACAGCACGACTGTCCTATGGTGAACAAGAGCTTGACAGAGGAGCATCTGGTGATACTACCGTGT ATGGCCCGAAAGAAGATTCACCTCATGAAAAATACCCCGAGAGGCCATCACTTTCAGAGACTCCCGAAATTAACAGAAGACATCCTGACATTGGTTATCC CCCCAGTGGAAGTTACGCTGAGCTGTCAGCACGGGTGGCACATGATGCACAAATGCTCGAAAGAAGAGCATCTAAGATTCCTACAGTGGAGGGCCAGTTA GGAGGAAACTTCAGAAAGGTACCTGAAATTCCACCCCTTCAGGAACTGGGTGGAACCGCTTATCAACATCGGGGACGTGATGTAGCTACGGCGTATGCAC ATCACACAGAGGCATATGGTGGAAATCGAGACATTGTGGTTGATGACATAAGCAGGAGGCACGGCTTTGACGCGGGGTATCCACAGACTGGAGCTTATTT CGAATCATCGGCAGCACAATCACCTTTTGGAACAAGCAGTTCCGTGTCAGACAAGTATATGCAGCAATCATCTTACGGAACTTCCGGGTCTGTGATGGAT AGGTATGCTCCGCTGTTGCACGAATTAAATCAGCAACCAATCCATCCATTAAATCAGCAACCGATGCATGCATTAAATCAACAACCAATGCTGGGATGTT TTGATTATGGAGGTGGGGGTTACGAAAATCGACAGCATCCTGTATCTGCAGGGTTCCGGGTTGATTCGGCGAATCTCCCCCCTCCTCCTGGCCCTCCTAT GCATCCAGGATCTGGATTTGGAGGTGGACACATGGCACAACAACAGCAGCCTCCACCTGGGTTTCCGATGGGATTTGCTCCTGGTCCTCGGCAACATCCA TATGGACACCATCACAGCTCGGCAGGTTGGATGAATGCCGACTAG
AA sequence Show only first row Show all	>Lus10038454 pacid=23158387 polypeptide=Lus10038454 locus=Lus10038454.g ID=Lus10038454.BGIv1.0 annot-version=v1.0 MNTSSGENLAKQERNESRVNRASTNTNAQKKPGIDLPELDADSERRLLAFIKSASSSVSMADMVKKYKAPSTHIYSSRTAVNKTITVGKVEGAVEAVRTA AKKLDNKCSVEDAKAVCEPGVLGQVFKWKNKLRVYLAPFLHGMRYTSFGRHFTKPEKLAEIVNKLDAQKLERGASEKSSGDSQKGKKLPRRSTPIPSPSE TRESGNRSWEHETARLSYGEQELDRGASGDTTVYGPKEDSPHEKYPERPSLSETPEINRRHPDIGYPPSGSYAELSARVAHDAQMLERRASKIPTVEGQL GGNFRKVPEIPPLQELGGTAYQHRGRDVATAYAHHTEAYGGNRDIVVDDISRRHGFDAGYPQTGAYFESSAAQSPFGTSSSVSDKYMQQSSYGTSGSVMD RYAPLLHELNQQPIHPLNQQPMHALNQQPMLGCFDYGGGGYENRQHPVSAGFRVDSANLPPPPGPPMHPGSGFGGGHMAQQQQPPPGFPMGFAPGPRQHP YGHHHSSAGWMNAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	0	1
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	1.7	0.7483
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	2.0	0.7066
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	3.9	0.6843
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	11.5	0.6687
					Lus10019295 [exp]	13.4	0.6268
AT5G11810			unknown protein		Lus10003649 [exp]	14.1	0.6706
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Lus10011319 [exp]	15.2	0.6220
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	16.5	0.6378
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10026557 [exp]	20.6	0.6186
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	20.6	0.6629

Compare expression of checked genes

Lus10038454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.