Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) AT2G20630 298 / 9e-102 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 295 / 1e-100 Protein phosphatase 2C family protein (.1) AT3G15260 275 / 9e-93 Protein phosphatase 2C family protein (.1.2) AT1G22280 266 / 4e-89 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G78200 257 / 1e-85 Protein phosphatase 2C family protein (.1.2) AT1G34750 254 / 2e-84 Protein phosphatase 2C family protein (.1) AT5G24940 200 / 2e-61 Protein phosphatase 2C family protein (.1) AT5G10740 194 / 2e-60 Protein phosphatase 2C family protein (.1) AT1G43900 190 / 3e-58 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018618 [exp] 300 / 3e-102 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 300 / 3e-102 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 287 / 2e-97 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 282 / 3e-95 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 281 / 6e-95 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 261 / 4e-87 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10009210 [exp] 257 / 1e-84 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2) Lus10005405 [exp] 243 / 2e-80 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10033453 [exp] 242 / 8e-80 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013300 [exp] 303 / 1e-103 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 295 / 1e-100 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.011G116700 [exp] 291 / 5e-99 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.018G150800 [exp] 291 / 6e-99 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 283 / 7e-96 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 273 / 4e-92 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 267 / 1e-89 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 188 / 1e-58 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 187 / 2e-58 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 187 / 4e-58 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10038455 pacid=23158457 polypeptide=Lus10038455 locus=Lus10038455.g ID=Lus10038455.BGIv1.0 annot-version=v1.0 ATGATGTCCACTGCAATGAAGGTGAAGCATGGTTACCACTTGGTTCGAGGGAACATGGGTCATGGCATGGAAGACTACTTAGCCGCTGAGAACAGAGAAG TGAACGGCCACCAACTAGGCTTGTATGCAATCTTCGACGGCCATTCCGGTAAAGATGTCGCCAAATATCTCCGTTCTCATCTCTTCGACAACATCCTCAA CCAGCCCGATTTCTGGGAGAACCCGAAAACCGCCATCAGAAGAGCATACAAGACCACAAACGAAGAGGTTCTGGCAAATGTTGTGGGTCAAAGGGGCGGC TCCACGGCGGTTACTGCCATACTGGTCGATGGGAAGGCGCTGGTGGTGGCTAATGTGGGCGATTCGAGGGCGGTTTTGTGTAGGAATGGTGTTGCGAAGC AGATATCGGTAGATCATGAGCCGGAGAAGGAGAGGGAGCTTGTTGAGAACAGAGGTGGCCTAGTCATTCAGCTTCCTGGTATGCCTCGCAACCATGACAA TCCGGTCCGGAATATACCTCGTGTGGACGGGGAGCTGGCAATGTCGAGGGCATTCGGAGATGCAGACCTGAAGGATCACATTTCTTCCGACCCAGATTTG AAGATTGTAAGAGTCGACCCTGCAGCCTCTGACTTGATCATTCTGGCAAGTGATGGCATCTGGAAGGTGATGTGGAACCAGGAGGCTTGTGACTGCATCA GAGACGTAGAGGATCCAAGTAGAGCATCCAAGGCGTTGATCGCACAGGCATTGGCCAAAGGCAGCCAAGATGATATTTCTTGTATTGTTGTGATGATTCA CTAG
AA sequence Show only first row Show all	>Lus10038455 pacid=23158457 polypeptide=Lus10038455 locus=Lus10038455.g ID=Lus10038455.BGIv1.0 annot-version=v1.0 MMSTAMKVKHGYHLVRGNMGHGMEDYLAAENREVNGHQLGLYAIFDGHSGKDVAKYLRSHLFDNILNQPDFWENPKTAIRRAYKTTNEEVLANVVGQRGG STAVTAILVDGKALVVANVGDSRAVLCRNGVAKQISVDHEPEKERELVENRGGLVIQLPGMPRNHDNPVRNIPRVDGELAMSRAFGDADLKDHISSDPDL KIVRVDPAASDLIILASDGIWKVMWNQEACDCIRDVEDPSRASKALIAQALAKGSQDDISCIVVMIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	0	1
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10012816 [exp]	3.0	0.7339
					Lus10032804 [exp]	4.5	0.7903
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005599 [exp]	5.8	0.7692
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010212 [exp]	6.9	0.7156
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035234 [exp]	11.2	0.6337
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	11.6	0.7210
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	12.7	0.7210
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	13.0	0.7027
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	13.7	0.7210
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10032488 [exp]	13.8	0.6687

Compare expression of checked genes

Lus10038455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.