Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 204 / 1e-66 RmlC-like cupins superfamily protein (.1) AT5G39160 201 / 2e-65 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 199 / 9e-65 RmlC-like cupins superfamily protein (.1) AT5G39190 199 / 9e-65 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39110 197 / 6e-64 RmlC-like cupins superfamily protein (.1) AT3G04200 196 / 1e-63 RmlC-like cupins superfamily protein (.1) AT5G38940 195 / 3e-63 RmlC-like cupins superfamily protein (.1) AT5G39150 195 / 4e-63 RmlC-like cupins superfamily protein (.1) AT5G39120 194 / 7e-63 RmlC-like cupins superfamily protein (.1) AT5G39180 193 / 1e-62 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023351 [exp] 333 / 9e-118 AT3G05950 236 / 5e-79 RmlC-like cupins superfamily protein (.1) Lus10038441 [exp] 275 / 5e-95 AT5G38940 223 / 5e-74 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 249 / 1e-84 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 248 / 6e-84 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 248 / 7e-84 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 247 / 2e-83 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032017 [exp] 237 / 1e-78 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10015129 [exp] 231 / 2e-77 AT5G39130 242 / 2e-81 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 231 / 3e-77 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 256 / 2e-87 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 256 / 3e-87 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 247 / 9e-84 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 246 / 3e-83 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163800 [exp] 244 / 9e-83 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 243 / 3e-82 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G464100 [exp] 223 / 3e-74 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 219 / 1e-72 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G162200 [exp] 218 / 2e-72 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.019G026400 [exp] 213 / 2e-70 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10038456 pacid=23158154 polypeptide=Lus10038456 locus=Lus10038456.g ID=Lus10038456.BGIv1.0 annot-version=v1.0 ATGGCGTCATCAACACTAGTAGCTAGCATTCTCCTCTTTGCTCTAACGGCACTTTCCTTCTCCCCAAACCTTTCCATGGCCGACCCAGCCAACCTCCAAG ATTTCTGCGTCGCCGATCCCAAATCTCCAGTCCTCGTCAACGGCGTCGCATGCAAAAACCCCCAAATGGTCACACCCCAAGACTTCTACTTCTCCGGACT TCACATGCCCGGCAACACAACCAACCCACAGGGCTCTAGAGTCACTCCCGTATCCGTCACCCAGCTCCCCGGCCTCAACACGTTGGGCGTCTCCATGGCT CGAATCGACTACGCTCCCTACGGCCAGAACCCGCCCCACACGCACCCACGCGCCACCGAGATGGTGACCGTCGTGGAAGGAAGCCTCGAGGTCGGATTCG TCACGTCCAACCCGGACAACGCTCACCACCACAAGACGTTGGTGAAAGGTGACGTGTTCGTGTTCCCTGCGAATTTGAACCCCGGTGTCATCTCCGTTGC GAATTCCGTGTTTGGTGCGGATCCGGCCATTCCTGCTGATATTCTTGCAAAGTCCTTCTCGCTTGATGTTACTGTCGTCAACTTTCTGCAGACCAAGTTC TGA
AA sequence Show only first row Show all	>Lus10038456 pacid=23158154 polypeptide=Lus10038456 locus=Lus10038456.g ID=Lus10038456.BGIv1.0 annot-version=v1.0 MASSTLVASILLFALTALSFSPNLSMADPANLQDFCVADPKSPVLVNGVACKNPQMVTPQDFYFSGLHMPGNTTNPQGSRVTPVSVTQLPGLNTLGVSMA RIDYAPYGQNPPHTHPRATEMVTVVEGSLEVGFVTSNPDNAHHHKTLVKGDVFVFPANLNPGVISVANSVFGADPAIPADILAKSFSLDVTVVNFLQTKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10038456 [exp]	0	1
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	1.4	0.9984
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019783 [exp]	2.0	0.9959
					Lus10001872 [exp]	2.4	0.9956
					Lus10004634 [exp]	2.8	0.9931
					Lus10037837 [exp]	4.7	0.9290
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	5.5	0.9648
					Lus10006761 [exp]	7.7	0.9286
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10041634 [exp]	7.9	0.9349
AT3G19550			unknown protein		Lus10002115 [exp]	11.2	0.9472
					Lus10033284 [exp]	14.0	0.9275

Compare expression of checked genes

Lus10038456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.