Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38960 188 / 3e-60 RmlC-like cupins superfamily protein (.1) AT5G38940 179 / 8e-57 RmlC-like cupins superfamily protein (.1) AT1G09560 178 / 2e-56 GLP5 germin-like protein 5 (.1) AT5G38930 178 / 2e-56 RmlC-like cupins superfamily protein (.1) AT1G02335 178 / 3e-56 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G05950 178 / 3e-56 RmlC-like cupins superfamily protein (.1) AT5G39160 177 / 6e-56 RmlC-like cupins superfamily protein (.1.2.3) AT3G04200 177 / 7e-56 RmlC-like cupins superfamily protein (.1) AT3G62020 177 / 9e-56 GLP10 germin-like protein 10 (.1.2) AT5G39190 177 / 1e-55 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023350 [exp] 341 / 2e-120 AT1G02335 195 / 7e-63 germin-like protein subfamily 2 member 2 precursor (.1) Lus10023349 [exp] 311 / 1e-108 AT3G05950 206 / 3e-67 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 226 / 3e-75 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 217 / 1e-71 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 212 / 1e-69 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10030047 [exp] 211 / 3e-69 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10035186 [exp] 211 / 3e-69 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10035280 [exp] 210 / 9e-69 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 210 / 1e-68 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163800 [exp] 213 / 5e-70 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 209 / 1e-68 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 209 / 1e-68 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 205 / 8e-67 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 204 / 8e-67 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.004G179855 [exp] 195 / 5e-63 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1) Potri.004G179888 [exp] 195 / 5e-63 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1) Potri.004G179833 [exp] 195 / 5e-63 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1) Potri.004G179844 [exp] 195 / 5e-63 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1) Potri.004G180100 [exp] 195 / 2e-62 AT5G39130 275 / 1e-93 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10038457 pacid=23158452 polypeptide=Lus10038457 locus=Lus10038457.g ID=Lus10038457.BGIv1.0 annot-version=v1.0 ATGGATTCCGAGTTTGTTCTGCTCTTTGTAGTTCTTGCATTGGCCTCTTCTGTCGCTCTGGCCACCGACGCCGGCCCGCTTCAGGACTTCTGTGTGGCCG ACAAAAACGTAGCCCCGACGAACGGGTTCGATTGCAAGCCACCCCAGTCGGTAACTCCGGATGACTTCAGTGTCGCGGGGCTGGACAAACCTGCTACCGC CTCGAACACACACGGTTGCGTAGCCTCACTCTTCACTGTCCAACAGATCCCAGGTCTCAACACCCTAGGCCTCTCCATGGTTCGTCTCGACTTTGTCAAC GGCGGAGTTAACCCACCCCACCTACACCCTAGAGCCAGCGAGATCATGGTCGTGATGGAGGGCACCATTGAAGTAGGGTTCATCACCTCATTGCCCGAAA AGCGCCTCATCACCAAGGTCCTCAAGACCGGGGAGGCGTTTGTGTTCCCAACCGCTCTGATTCATTACCAGAGGAACGTCGGGGAAGGCCCCGCTTACGC TCTGGCAGCTCTTAACAGCCAGAACCCCGGTACACAGCCGGTCTTCGGCTCCGTGTTTGGGTCCTGCCCAAAGCTTTCGGTTGAGGTTCTCACTAGATCT CTCGACGCTGATCCGACTACCCTTACTCAGATCGAGAGCAAGTTCAAATGA
AA sequence Show only first row Show all	>Lus10038457 pacid=23158452 polypeptide=Lus10038457 locus=Lus10038457.g ID=Lus10038457.BGIv1.0 annot-version=v1.0 MDSEFVLLFVVLALASSVALATDAGPLQDFCVADKNVAPTNGFDCKPPQSVTPDDFSVAGLDKPATASNTHGCVASLFTVQQIPGLNTLGLSMVRLDFVN GGVNPPHLHPRASEIMVVMEGTIEVGFITSLPEKRLITKVLKTGEAFVFPTALIHYQRNVGEGPAYALAALNSQNPGTQPVFGSVFGSCPKLSVEVLTRS LDADPTTLTQIESKFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38960			RmlC-like cupins superfamily p...		Lus10038457 [exp]	0	1

Compare expression of checked genes

Lus10038457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.