Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29550 847 / 0 TUB7 tubulin beta-7 chain (.1) AT5G23860 844 / 0 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G62700 842 / 0 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 842 / 0 TUB2 tubulin beta chain 2 (.1) AT5G44340 842 / 0 TUB4 tubulin beta chain 4 (.1) AT1G20010 842 / 0 TUB5 tubulin beta-5 chain (.1) AT5G12250 841 / 0 TUB6 beta-6 tubulin (.1) AT1G75780 840 / 0 TUB1 tubulin beta-1 chain (.1) AT4G20890 837 / 0 TUB9 tubulin beta-9 chain (.1) AT1G64740 369 / 2e-124 TUA1 alpha-1 tubulin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023348 [exp] 880 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10040712 [exp] 848 / 0 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 848 / 0 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10021094 [exp] 844 / 0 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10027476 [exp] 843 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10039231 [exp] 843 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10036069 [exp] 842 / 0 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10026813 [exp] 842 / 0 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10017217 [exp] 841 / 0 AT1G75780 854 / 0.0 tubulin beta-1 chain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G464400 [exp] 869 / 0 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.011G162500 [exp] 865 / 0 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2) Potri.006G095000 [exp] 846 / 0 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.001G106100 [exp] 844 / 0 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.009G040200 [exp] 843 / 0 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.009G067100 [exp] 842 / 0 AT5G12250 852 / 0.0 beta-6 tubulin (.1) Potri.015G038800 [exp] 842 / 0 AT5G12250 849 / 0.0 beta-6 tubulin (.1) Potri.006G035400 [exp] 842 / 0 AT5G12250 860 / 0.0 beta-6 tubulin (.1) Potri.016G033200 [exp] 842 / 0 AT5G12250 862 / 0.0 beta-6 tubulin (.1) Potri.003G125400 [exp] 842 / 0 AT5G23860 857 / 0.0 tubulin beta 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0442 [flax] [poplar] Tubulin_C PF03953 [flax] [poplar] Tubulin_C Tubulin C-terminal domain CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10038458 pacid=23158258 polypeptide=Lus10038458 locus=Lus10038458.g ID=Lus10038458.BGIv1.0 annot-version=v1.0 ATGAGAGAAATCCTCCACATCCAGGGCGGCCAGTGCGGCAACCAGATCGGCGCCAAGTTCTGGGAGGTAATCTGCGACGAGCACGGCATCGACCACACCG GCAAGTACAGCGGCGATTCTGAGCTCCAGCTCGAACGCATCAATGTCTATTACAACGAGGCCAGCGGCGGCAGGTACGTTCCCCGTGCCGTCCTCATGGA TCTGGAGCCCGGTACTATGGACTCCGTTAGATCCGGTCCTTTCGGCCAGATCTTCCGGCCTGATAACTTCGTCTTCGGCCAGTCCGGCGCCGGCAATAAC TGGGCCAAGGGCCATTACACTGAGGGCGCGGAGTTGATCGACTCTGTTCTTGATGTCGTCAGGAAGGAGGCCGAGAATTGCGATTGTCTTCAAGGGTTTC AGGTGTGTCATTCATTGGGAGGTGGCACTGGTTCTGGAATGGGGACGCTTCTGATATCTAAGATCAGGGAAGAGTATCCAGATCGGATGATGCTGACGTT CTCAGTCTTCCCATCTCCCAAGGTGTCCGACACCGTCGTGGAGCCGTACAATGCTACGCTCTCTGTTCATCAGCTTGTTGAAAACGCCGACGAGTGCATG GTTTTGGACAATGAGGCCTTGTATGACATTTGTTTCCGCACCCTCAAGCTGGCTACTCCCACCTTTGGAGATCTTAACCACCTAATTTCAGCCACTATGA GCGGAGTCACTTGCTGCCTTCGATTCCCCGGACAGCTAAACTCCGACCTTAGAAAACTCGCAGTGAACCTCATTCCATTCCCTCGCCTACATTTCTTCAT GGTGGGATTCGCCCCCCTAACATCAAGAGGATCACAGCAGTACCGAAACCTAACAGTCCCGGAGCTGACTCAACAAATGTGGGACGCCAAGAACATGATG TGCGCCGCCGACCCACGCCACGGACGCTACCTCACCGCTTCCGCAATGTTCCGCGGCAAGATGAGCACGAAAGAAGTCGACGAACAGATGATCAATGTCC AGAACAAGAACTCTTCCTACTTTGTCGAGTGGATCCCCAACAACGTGAAATCCAGCGTCTGCGACATCCCTCCCAAGGGTTTAAAAATGGCCTCGACTTT CGTAGGGAACTCCACGTCGATCCAGGAGATGTTCAGGCGGGTGAGCGAGCAGTTCACAGCCATGTTCAGGCGGAAGGCGTTCTTGCATTGGTACACCGGG GAAGGTATGGACGAGATGGAGTTCACCGAGGCGGAGAGTAATATGAATGATCTGGTGGCTGAGTACCAGCAGTACCAGGATGCGACGGCGGACGATGAGG AGTACGAAGAGGAGGAAGAAGAAGCATAA
AA sequence Show only first row Show all	>Lus10038458 pacid=23158258 polypeptide=Lus10038458 locus=Lus10038458.g ID=Lus10038458.BGIv1.0 annot-version=v1.0 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSELQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM VLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMM CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEYEEEEEEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	0	1
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	1.0	0.9851
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	1.4	0.9751
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	3.5	0.9582
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	3.9	0.9426
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	4.2	0.9555
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	4.2	0.9642
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	4.7	0.9359
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	5.7	0.9484
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	5.7	0.9632
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	6.0	0.9479

Compare expression of checked genes

Lus10038458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.