Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20880 92 / 4e-21 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1) AT5G44350 60 / 4e-10 ethylene-responsive nuclear protein -related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023347 [exp] 266 / 3e-89 AT4G20880 88 / 2e-19 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G464300 [exp] 84 / 4e-18 AT4G20880 85 / 1e-17 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1) Potri.011G162400 [exp] 82 / 1e-17 AT4G20880 75 / 3e-14 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038459 pacid=23158135 polypeptide=Lus10038459 locus=Lus10038459.g ID=Lus10038459.BGIv1.0 annot-version=v1.0 ATGCCGCTTCCATGGAAGAAGTCCAAAGTCGCCACCATTTCCCGACTCGTGACCGATCTCCACCACCATTCCCCCAAACGCGGCAACTCACTAGTCGTCC AGACTGGTTTCCCCGCCTCCCTCGTCGATCTCTTCTACAAGAACCGCGACCGCTTGAAGAAACCCTACTCCTCCAGAAACAGGAAGCGCAATCAATCCGG CGATGAATACCAGGAGTTTGTAATTAGCGATCCTGTACTCACGGACCCGATCGACGGCGGCGCTGAATCCAGCGGCGGTTACTCTGGAATCGACGAGATT CAAGAGGTGGCGGAAGAGAAGGTTAGCAGCAACGAGAGAGTGCAGGTCCACAAGGATAGAACCAGGAAGAGGATGATGAAGAAATTGGTGAAGAAACTGC GCCATAGAAAGAAGGAGGAGGAGATCGTCGCTGTCGCCGTTAAAAGGCCTAGCGACCGGAGTGAAATTGGAAAATTGGGGAAACCGGAAACCCCAGATCG TAGTAATCGGAAAGGGAAGTTGTTGTTGATCTCTGATGTGCTTGAGAATCGGGGGAACAGTGAATGTGAAGAAGACGGAACACTGATCGCAGATGATGAT GATGATGGAGAGTGTTGTTTAACCAGTGGAGAATTGCAGTCTGAATTATCAGAGATTAGCAATTCCAGTAGAAGCGGTGGTAATACTAATTCAGGTTGTG TGATTCTTCTCCTGGCTGTTCTTGTTGGACTTGCCGGGGGAAGATTGCTAGCCCTTTTGCTTACGGTTCTCGCCTGTTTGGTGCTCAAGTTTGCTGGGAG ACGGAGAAGTTCCAGATAG
AA sequence Show only first row Show all	>Lus10038459 pacid=23158135 polypeptide=Lus10038459 locus=Lus10038459.g ID=Lus10038459.BGIv1.0 annot-version=v1.0 MPLPWKKSKVATISRLVTDLHHHSPKRGNSLVVQTGFPASLVDLFYKNRDRLKKPYSSRNRKRNQSGDEYQEFVISDPVLTDPIDGGAESSGGYSGIDEI QEVAEEKVSSNERVQVHKDRTRKRMMKKLVKKLRHRKKEEEIVAVAVKRPSDRSEIGKLGKPETPDRSNRKGKLLLISDVLENRGNSECEEDGTLIADDD DDGECCLTSGELQSELSEISNSSRSGGNTNSGCVILLLAVLVGLAGGRLLALLLTVLACLVLKFAGRRRSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20880			ethylene-responsive nuclear pr...		Lus10038459 [exp]	0	1
AT5G61660			glycine-rich protein (.1)		Lus10032507 [exp]	6.0	0.8027
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	11.4	0.7534
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10023968 [exp]	12.0	0.7613
AT3G22970			Protein of unknown function (D...		Lus10003087 [exp]	13.5	0.7888
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	16.9	0.8127
AT4G09810			Nucleotide-sugar transporter f...		Lus10020837 [exp]	25.9	0.7539
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	26.2	0.7842
AT3G06330			RING/U-box superfamily protein...		Lus10012793 [exp]	27.8	0.6801
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	32.7	0.7597
AT5G10310			unknown protein		Lus10035922 [exp]	34.3	0.7158

Compare expression of checked genes

Lus10038459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.