Plant FIBer expression Database

Lus10038461 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12290 659 / 0 DGS1 dgd1 suppressor 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023345
[exp]
1104 / 0 AT1G07970 736 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G022200
[exp]
716 / 0 AT5G12290 660 / 0.0 dgd1 suppressor 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08637 NCA2 ATP synthase regulation protein NCA2
Representative CDS sequence
>Lus10038461 pacid=23158334 polypeptide=Lus10038461 locus=Lus10038461.g ID=Lus10038461.BGIv1.0 annot-version=v1.0
ATGGAGAACAACGGCGCCGGCGAGCCAGAAGTGCACGGTGTAAAACGCCTAGTTTCCTTGTACTCCAACCAAGTATGGAACCGCCTCGCCGCTTTCTTTC
CATCCGACTCCAATTTTCTCGGCAGAATCGCAAGCATACGCCGCCAGACAGTTCGTCGTCGCGATCTCTTCCTCCCTCTTCCTCTATCTTCGCACATTCT
CGACTCCTACTTGACGAAACCAGGATCATCTCGGGTGTATGATGTTCTTCAAGATAGGCTGGAGAGAAGTTACAATAATCTTCACAGTATTCAGAAGAAT
CTGTTGTTTTGGGAATGTAGAGCGGAGGGATCAGATCGAGAGAAGTTGTACTTCATGTTGTTGGAAAGAGGTCCGAGGGCTTTCATTGATGGAACAGTTC
AGTTAGCGTGTGAGACCTTGAAGGATGGTTTCTCCACACAGCAACTAGCGCTATCTGCATCAGCTTTCATAAATGAGAGATTGATTGTCTTGAGAACCTT
GAGATGTGCAATTGCTGCTTTCTTGGCTGAGGTTTACAGGGAAGTTGATAAATGTGGAAAGGATTTGACTGAAGATCCAGAAAAGGCATTTCCCTCACTG
TTATTCACTATTGACAATTTGTTTTCAACTTTAGAGGCATCCATTGGCCATCTACATGCCATGCGCGAGGCTGGTTCCTCTGTGGATGGAAGCTATTCAC
TCCCTCTACTGTTTGAGAAACTTCCAGAGGTTAATCAAGATGGTTCTGAGTGGACTGATTGTGAGATAACAGATGCCATCGGTGTGGTGTACAAAAATTT
AGAGAAGCTGGACTCTTATTTGTCACTTGTGGTTGTCAAACATCAAAAGCCAAGGAAGTTAACTCAACACTGGATCCGTTATACCTGTGGTGCCGTTGGC
TTCTCAGTTTGTTCTATTTGGCTTCTTCGTCACAGTAGATTGATGGGAAGTTCTGATATTGATAATTGGATTCATGAAGCAAGGGATTCAATAGCTAGCT
TCTATGAGGACCATGTTGAACAACCGATTTTGTCCATCAGAGATGAACTTTTTGATACATTCAGGAAGAGACATAAAGGAGTGATGGAAATCGAAGAAGT
GCAGTTGACAGCTGGTTCTCTGCACAGGATGTTGTTGGCTTTCAGTGAGCAGACTCACGAGGGAAGTTTCCCTGAGAATGCATCAGATCAGAAAATGCTA
GAAGTAGTGATGAGCAGGTATGAAAAAGAACTTGAACATCCAATTCATAATCTGGTAAAAGGAGAGCTAGCTCGTGCTTTGCTCATCCAGGTTCAAAAGC
TAAAGTTAGACATCGAAACGGCTATGCTCGAGCTGGATCAGATCCTCAAAGCAAATGAGATCAACTTTGCTATTCTAGCAGCCTTACCAGCATTTGCACT
CTCAGTTGTTCTCCTCATGTTATTAAGAGCCTGGATTAAACAGGACACCAGAGCTGAAGGAAGGGGGAGAATTGCTAGGCGTCACAGGAGGTTGCTTTTG
GCGGAGGTGGAGAAAAGTATTATGCAGTACCAAATTTACCTGGATCACGGGCTGGGAACCGAGTCACAAAGCATGTTCGGGATGGTGTTATACAGTCTGA
ATCGCTTGTGCCTTGCAGTCGAGAGGCACGCGAAAGCAACTGGTGAATGGCGATTGTTGAGACAGGACATTATGGAACTAGGGAAACCGGGCCTGAAAAC
CGAGTACAAGCTGAGAGTGACCTTGCGGATGGAGCGTGCTTACGAATGCTTGCTTCCTTCAACCACACGCATGTAA
AA sequence
>Lus10038461 pacid=23158334 polypeptide=Lus10038461 locus=Lus10038461.g ID=Lus10038461.BGIv1.0 annot-version=v1.0
MENNGAGEPEVHGVKRLVSLYSNQVWNRLAAFFPSDSNFLGRIASIRRQTVRRRDLFLPLPLSSHILDSYLTKPGSSRVYDVLQDRLERSYNNLHSIQKN
LLFWECRAEGSDREKLYFMLLERGPRAFIDGTVQLACETLKDGFSTQQLALSASAFINERLIVLRTLRCAIAAFLAEVYREVDKCGKDLTEDPEKAFPSL
LFTIDNLFSTLEASIGHLHAMREAGSSVDGSYSLPLLFEKLPEVNQDGSEWTDCEITDAIGVVYKNLEKLDSYLSLVVVKHQKPRKLTQHWIRYTCGAVG
FSVCSIWLLRHSRLMGSSDIDNWIHEARDSIASFYEDHVEQPILSIRDELFDTFRKRHKGVMEIEEVQLTAGSLHRMLLAFSEQTHEGSFPENASDQKML
EVVMSRYEKELEHPIHNLVKGELARALLIQVQKLKLDIETAMLELDQILKANEINFAILAALPAFALSVVLLMLLRAWIKQDTRAEGRGRIARRHRRLLL
AEVEKSIMQYQIYLDHGLGTESQSMFGMVLYSLNRLCLAVERHAKATGEWRLLRQDIMELGKPGLKTEYKLRVTLRMERAYECLLPSTTRM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G12290 DGS1 dgd1 suppressor 1 (.1) Lus10038461
[exp]
0 1
AT2G18850 SET domain-containing protein ... Lus10006953
[exp]
3.0 0.9146
AT3G04710 TPR10 tetratricopeptide repeat 10, a... Lus10003260
[exp]
11.0 0.8941
AT4G09800 RPS18C S18 ribosomal protein (.1) Lus10022057
[exp]
13.5 0.9049
AT1G09280 unknown protein Lus10008045
[exp]
16.6 0.8376
AT1G09300 Metallopeptidase M24 family pr... Lus10031427
[exp]
16.7 0.8698
AT1G54650 Methyltransferase family prote... Lus10006576
[exp]
19.0 0.8947
AT3G61140 EMB78, CSN1, CO... EMBRYO DEFECTIVE 78, COP9 SIGN... Lus10036566
[exp]
20.4 0.8979
AT5G02610 Ribosomal L29 family protein ... Lus10019179
[exp]
20.5 0.8944
AT1G52800 2-oxoglutarate (2OG) and Fe(II... Lus10008097
[exp]
28.1 0.8886
AT1G08220 unknown protein Lus10005355
[exp]
28.1 0.8550

Lus10038461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.