Plant FIBer expression Database

Lus10038462 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07970 626 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023345
[exp]
1067 / 0 AT1G07970 736 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G014900
[exp]
770 / 0 AT1G07970 703 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09786 CytochromB561_N Cytochrome B561, N terminal
Representative CDS sequence
>Lus10038462 pacid=23158241 polypeptide=Lus10038462 locus=Lus10038462.g ID=Lus10038462.BGIv1.0 annot-version=v1.0
ATGGAAGGGCGATCATCTCCGCCAGCGAGCAAATCGGCGAAGTTCGCCGTCTACCAGCACCCCTCCTTGACTGCTGCCCTAACTGCTGCCAGCCTTCAAC
CCTCTAAATCCACGTTTCTGTCTATAGTGTTGCTCTCCTCTGCCTCTGCTCTCGCTCTTTTCTCCATTGTTTCCAGGGAAAATGGGTTCATTGAAATGGT
TGAAGTCGGCTTTTTCTCACGGCGGGCAGCTTATATATTTGCTAAGGCAGTGGAGGGTGTGGTGGGTGTTCTCTTCTTTGGATGTTTGTTTGGCCTTCTT
AGAGTCATCTCCTGGAAAAGGGTTGGAAATGTTGCTAGTGTGCCAATGATATCTCCAACTGAAACAAAGGACCTTCCAGAACTGACCAGCCGTCAACTGG
GGTTTTTAGGTGTAAGGCCAAAAGTTGAAGCAATTCCAGCGGAGTATTCAAAAAAACCTCCAAAGTCTAAACCCACACCTGCGTCAGATTTGCTTGTTCC
AATTCACCAACAAACGACTGCTTCTAATCTTAGGTCTCGTGTCACATCTGATAAATCAAGTGTTGGTAGTGGAAATAAGATGATGACCTCTTTCGGCAGC
CCGTCCAAATCACAATCTTCACCATCATCTATGTATCTTGTCCCACGGATCAGTTCACCACTACCGTCCGGACAATCTTCACCGGGAATGGATTCAGCTG
TTTCAACTCCTTGGTCAAGTAAGAGAGCCTCCTCTGCAAAAGAGATAGTAACGGAAGAGGAACTTGAGAAGTTCTTGGCAGATGTTGATGCCAAATTTTC
TGAATCAGCAGGGAAACACACAACTCCACCCCCAACTGTTAGAGGCTTTGGCATACTGAGTCCTGGTAATGTTCCAAGTCCGACCAATACATCTGGAACT
ACAAGGAGTATGCCCTTGAGGCCAGTGAGGATGTCTCCTGGCTCCCAGAAGTTCGCCACTCCTCCGAAGAAAGGAGAAGGAGAGCTTCCTCCACCAATGT
CCATGGAAGAGGCCGTTGAAGCTTTCAAGCATTTGGGGATCTATCCACAAATAGAGCAGTGGCGTGATCACCTCAGACAGTGGTTTTCTTCAGTTCTGCT
TGGTCCTTTAATTAACAAAGTAGAAACCAGTCATATTCAGGTTATGCAAACAGCTGCTGAACTTGGGATTGCGATTACAGTCAATCGAGTTGGAAATTCG
GTAACTAGTGACACACCTGCTACTCTCTCTTCTATTTATGGGAAAGAATGGCAATCGGCATTCACATTTGATGAAGATGGTCGCCTTCATCAACTACGTG
CCACGCTTGTTCATGCCATTGATGCTTCTGCACCTAAGTTTAATCAGTTCAATAAACAGCAATCACCACAGCAGAATCCTATGGCACCTATTATGCAGAA
ATGTTTGGATGCTGTAACAGAGCATCAAAAACTTCGAGCATTGATGAAAGGAGAATGGGGCAAAGGTTTGCTACCTTATAGTAATGTCCGAGAAGATCAC
ATGGTACAAAGAATTCGAGAACTTGCGGAAGGAACCTGCGTGAAGAATTACGAGTATGTCGGAACTGGAGATGCTTATGATGCAAAGAACAAGAAAAGGA
CTCTCGATCTTCCGACTGATTCTCACTTGCTATTGTATTTGTTTTGCGCCTTCCTCGAACACCCAAAGTGGATGCTCCACGTAGATCCAACTTCCCATGC
AGGATCTCAGTCTAGCAAAAACCCGTTGTTTTTGGGTGTCTTGCCGCCCAAGGAAAGGTTTCCGGAAAAGTACGTCGCTGTTGTTTCAGCTGTTCCTTCA
ACTCTTCATCCTGGAGCTTGCGTACTTGTCATGGGGAAGCAAAGCCCCCCAGTCTTTGCCTTGTATTGGGATAAGATGCAACAGTTCTCTCTCCAGGGAA
GAACAGCTTTGTGGGACTCAATGATACTCATGTGCCATAGAATCAAGTTTGGGTATGGAAGCGTAGTCCGAGGAATGCATCTCGGTTCATCAGCTTTGAA
CATTCTTCCTGTTCTCGACTCCGAGAATGAATGCTGCTGA
AA sequence
>Lus10038462 pacid=23158241 polypeptide=Lus10038462 locus=Lus10038462.g ID=Lus10038462.BGIv1.0 annot-version=v1.0
MEGRSSPPASKSAKFAVYQHPSLTAALTAASLQPSKSTFLSIVLLSSASALALFSIVSRENGFIEMVEVGFFSRRAAYIFAKAVEGVVGVLFFGCLFGLL
RVISWKRVGNVASVPMISPTETKDLPELTSRQLGFLGVRPKVEAIPAEYSKKPPKSKPTPASDLLVPIHQQTTASNLRSRVTSDKSSVGSGNKMMTSFGS
PSKSQSSPSSMYLVPRISSPLPSGQSSPGMDSAVSTPWSSKRASSAKEIVTEEELEKFLADVDAKFSESAGKHTTPPPTVRGFGILSPGNVPSPTNTSGT
TRSMPLRPVRMSPGSQKFATPPKKGEGELPPPMSMEEAVEAFKHLGIYPQIEQWRDHLRQWFSSVLLGPLINKVETSHIQVMQTAAELGIAITVNRVGNS
VTSDTPATLSSIYGKEWQSAFTFDEDGRLHQLRATLVHAIDASAPKFNQFNKQQSPQQNPMAPIMQKCLDAVTEHQKLRALMKGEWGKGLLPYSNVREDH
MVQRIRELAEGTCVKNYEYVGTGDAYDAKNKKRTLDLPTDSHLLLYLFCAFLEHPKWMLHVDPTSHAGSQSSKNPLFLGVLPPKERFPEKYVAVVSAVPS
TLHPGACVLVMGKQSPPVFALYWDKMQQFSLQGRTALWDSMILMCHRIKFGYGSVVRGMHLGSSALNILPVLDSENECC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G07970 unknown protein Lus10038462
[exp]
0 1
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Lus10010483
[exp]
1.4 0.9563
AT5G53480 ARM repeat superfamily protein... Lus10041453
[exp]
5.1 0.9476
AT3G28730 NFD, SSRP1, ATH... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10018073
[exp]
8.1 0.9286
AT5G26360 TCP-1/cpn60 chaperonin family ... Lus10034682
[exp]
8.7 0.9424
AT1G69070 unknown protein Lus10019174
[exp]
9.0 0.9437
AT5G14520 pescadillo-related (.1) Lus10000618
[exp]
10.5 0.9407
AT5G11300 CYC2BAT, CYCA2;... CYCLIN A2;2, mitotic-like cycl... Lus10008103
[exp]
11.2 0.9333
AT3G57290 ATINT6, ATEIF3E... eukaryotic translation initiat... Lus10042031
[exp]
11.2 0.9402
AT2G41710 AP2_ERF Integrase-type DNA-binding sup... Lus10040140
[exp]
11.7 0.9241
AT3G11830 TCP-1/cpn60 chaperonin family ... Lus10008406
[exp]
14.1 0.9320

Lus10038462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.