Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60410 934 / 0 ATSIZ1, SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023344 [exp] 1394 / 0 AT5G60410 928 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10036123 [exp] 991 / 0 AT5G60410 913 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10011634 [exp] 939 / 0 AT5G60410 847 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015000 [exp] 1067 / 0 AT5G60410 1148 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.004G210200 [exp] 1058 / 0 AT5G60410 1146 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.008G042300 [exp] 682 / 0 AT5G60410 775 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.010G219600 [exp] 657 / 0 AT5G60410 732 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0306 [flax] [poplar] HeH PF02037 [flax] [poplar] SAP SAP domain CL0229 [flax] [poplar] RING PF02891 [flax] [poplar] zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence Show only first row Show all	>Lus10038464 pacid=23158348 polypeptide=Lus10038464 locus=Lus10038464.g ID=Lus10038464.BGIv1.0 annot-version=v1.0 ATGGATTTGGGGAACAGCTGCAAGGAAAAGCTGGTTTATTTCCGGATAAAGGAGCTCAAGGATGTATTGACTCAGTTAGGGCTTTCAAAGCAGGGGAAGA AGCAGGACCTTGTGGATCGTATATTGTCAGTGTTCTCTGATGACCAAGCTTCGAATGTGTGGCCAAAGAGGGGAGCTTTTGGAAAGGAAGAGGCAGCAAA ACTGGTTGATGACGTTTACAGGAAGATGCAGGTTTCTGGTACTGATCTAGCATCAAAGGGGCAGAGCGTTTCGAGTAGTAGCAGTGCTAAAATTAAAGGA GAACCGGAAGACTGTTTTCACTGTGATGTAAAAGTTCGGTGTCCATGTGGAAGCACATTGGGAACAGAGTCAATGATTAAGTGCGAGGAACCAAGATGCG AGGTTTGGCAACATATTGGTTGTGTTATACTTGCTGAAAAACCCATGGAAGGCAGTCCCCTAGTTCCTGAGGTGTTTTACTGTGAGATCTGTCGACTGAA CCGATCGGACCCCTTTTGGGTTACAATTGCTCATTCACTATATCCTGTGAAGCTGGTCACATCCAACATCCCAACTGATGGAAACTCATGTTCAGTATGC TTCAGTGCTAATCCAGTGCAGGGTGTGGAGTCGTCGTTTCACCTGACAAGGGCAGATAAGGACTTATTGGCTAAGCCAGACATTGACGTACAGGTATGGT GCATGCTTTTGAATGACAAAGTTATATTCAGGATGCAGTGGCCACAGTATGCTGATTTACAAGTTAATGGTGTACCTATTCGTGCAATTAATCGACCTGG CTCGCAACTGCTCGGAGCAAATGGTCGTGATGATGGCCCTATTATAACACCATGCTCAAAGGATGGGATCAATAAGATATCATTAACTGGATGTGATGCC CGGATTTTCTGCTTGGGCGTGAGGATTGTGAAGCGGCGTACACTTCAGCAGATACTTGGGTTGATACCTATTGAATCTGATGGTGAGCGTCTTGAGGATG CACTTGCTCGTGTTTGTCGTTGTGTTGGAGGTGGAGCTGCAACAGATGATGCTGATAGTGACAGTGATTTAGAAGTTGTTGCAGACTTCATTCCTGTCCA TCTTCGCTGTCCAATGAGTGGCTCAAGAATGAAAGTTGCTGGACGATTTAAACCTTGTGTTCACATGGGCTGTTTTGATCTTGATGTTTTTGTTGAAATG AATCAGCGCTCTAGGAAGGCAAGTGACATCGATTGTTTCATGTCTCTTAAATGTTCTTATTTTCCTAACGTCCTGTATACTAAACGGCTTATTAATTCAA TGCAGTGGCAGTGTCCCATTTGTCTCAAGAACTATTCTTTGGAAAATGTTATCATTGATGCTTATTTCAATCGCATCACCACTAAGATGAGGTACTTTAG TGAGGATATTACGGAGCTTGAGGTGAGGCCTGATGGTTCATGGCGCGTTAAAACTAGAACCGAAGCTGAGCGCAGAGAAGTTGGAGAACTATCACAATGG CACAATGCTGATGGCACTCCATGTGCACCTAAGGATGAGTTTCAGACGAAAGCAGAAACAGGGAAGCAGATAAAGCAGGAAGGTATTTTTGAAGGTCATG CTGCTAATGACTTGAAACTTGGGATTAAAAAGAATTATAGTGGGTATTGGCAAGGCAGCAAACCAGAGGATATGGATGCCTCTTCTTCAGATAACCATTT GCTGAAGGTTGAAACCCTTGACCAGAAAGTTATCCCTAGGAGTAGTAGTGCTACTGGCAGTGGTCGTGCAGGTGAAGATCCAAGTGTGAATCAGGATGGT GGTGGAAACTTTAACTTCACTAATAGTGGAATAGAACTTGATTCGTTAGCTCGCAACAGTGCTCCCACATATGGGTTTGGTGAGCGAACTATTTCTGCTC CAGCGGGGGATGCAGAGGTTATTGTTCTTAGTGATTCGGACGATGATATTCTCGTGTCCTCTGGTACTGGCTTCAACAATAACCGAAATGACGATGGGGC TGGTTTCTCGGCCATGCACTCTGGAGTTCCAGAAACGTGTCCCGAGAATCCCAATCTCGGTGCTGCTGATTGGGAAAATGATGAATTTGGGATACCCATC TGGCCATTGCAGGGTGGCCCTGGTTTCCCGTTATTTAGTTCAGAAGACTCGGATCCTGTGGTAGATTTGCACCATGGTCCTATGAACTGTACGACATCAA TAAATGGCTACAGTTTGGCTCCCCAGACGCATGCTAATTTGGTCCCAGCGTCTACTTTGGGTAGATCTGATGCAAATGATGGTTTGGTCGATAATCCTTT GTCAGTTCTCAAGGAAGATCCTTCTCTGCAGCTTTTTCTTCCAACCAGTCCGTCAGATTCTGCGATTCATTCCAATCTGAGAGATCAGGTTGATGTTTCT AATGGTGTTCGTTCTGAGGACTGGATCTCTCTCAGCCTTGGCGGTGCTGGTGGCCGCGGTGATGGCGAATCAGCTCATGCAAATGGATTAAATTTAAGAC GGTCTATTCCCAATAGGGCTGGTACAATGGGTTCCGTTGCCAACACTGCCTCATTACTTACCGGCACGAATGATGGTAGATCCAAAAAGGCAAGTCATCC AAGAACTGAAAGCCCTTTTTCTTCGTTCCCTCGACAAAAACGTTCTGTGAGACAGCGTTTGTACCTTAACATTGATACAGACTCTGACTAG
AA sequence Show only first row Show all	>Lus10038464 pacid=23158348 polypeptide=Lus10038464 locus=Lus10038464.g ID=Lus10038464.BGIv1.0 annot-version=v1.0 MDLGNSCKEKLVYFRIKELKDVLTQLGLSKQGKKQDLVDRILSVFSDDQASNVWPKRGAFGKEEAAKLVDDVYRKMQVSGTDLASKGQSVSSSSSAKIKG EPEDCFHCDVKVRCPCGSTLGTESMIKCEEPRCEVWQHIGCVILAEKPMEGSPLVPEVFYCEICRLNRSDPFWVTIAHSLYPVKLVTSNIPTDGNSCSVC FSANPVQGVESSFHLTRADKDLLAKPDIDVQVWCMLLNDKVIFRMQWPQYADLQVNGVPIRAINRPGSQLLGANGRDDGPIITPCSKDGINKISLTGCDA RIFCLGVRIVKRRTLQQILGLIPIESDGERLEDALARVCRCVGGGAATDDADSDSDLEVVADFIPVHLRCPMSGSRMKVAGRFKPCVHMGCFDLDVFVEM NQRSRKASDIDCFMSLKCSYFPNVLYTKRLINSMQWQCPICLKNYSLENVIIDAYFNRITTKMRYFSEDITELEVRPDGSWRVKTRTEAERREVGELSQW HNADGTPCAPKDEFQTKAETGKQIKQEGIFEGHAANDLKLGIKKNYSGYWQGSKPEDMDASSSDNHLLKVETLDQKVIPRSSSATGSGRAGEDPSVNQDG GGNFNFTNSGIELDSLARNSAPTYGFGERTISAPAGDAEVIVLSDSDDDILVSSGTGFNNNRNDDGAGFSAMHSGVPETCPENPNLGAADWENDEFGIPI WPLQGGPGFPLFSSEDSDPVVDLHHGPMNCTTSINGYSLAPQTHANLVPASTLGRSDANDGLVDNPLSVLKEDPSLQLFLPTSPSDSAIHSNLRDQVDVS NGVRSEDWISLSLGGAGGRGDGESAHANGLNLRRSIPNRAGTMGSVANTASLLTGTNDGRSKKASHPRTESPFSSFPRQKRSVRQRLYLNIDTDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10038464 [exp]	0	1
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025094 [exp]	2.0	0.8572
					Lus10031222 [exp]	3.5	0.7966
AT1G80550			Pentatricopeptide repeat (PPR)...		Lus10037555 [exp]	5.2	0.7734
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	6.2	0.8390
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	11.2	0.7763
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	15.5	0.8103
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	16.1	0.8416
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	18.2	0.8163
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	22.4	0.7851
					Lus10001309 [exp]	27.4	0.8134

Compare expression of checked genes

Lus10038464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.