Plant FIBer expression Database

Lus10038466 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60370 305 / 7e-101 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023342
[exp]
294 / 3e-100 AT5G60370 157 / 3e-47 unknown protein
Lus10023343
[exp]
258 / 1e-84 AT5G60370 128 / 3e-34 unknown protein
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF09810 Exo5 Exonuclease V - a 5' deoxyribonuclease
Representative CDS sequence
>Lus10038466 pacid=23158112 polypeptide=Lus10038466 locus=Lus10038466.g ID=Lus10038466.BGIv1.0 annot-version=v1.0
ATGACCCACTCCTCTTCTCCATCCTCAACTCCCCTTCAAGATCCCAACATTAACGTCTCCACTCCTAACCCCACCATTTCCGGCATCGCCATTGAGATAG
TCTCTGATGAAGAAATGGCCTTCTACGAAGCAGCAGCCGCCATGGCTGTCACCCACTCCTCATCTTTTTCTTCTTCTTCTTCTTCCTCCTCCAAGTCCTC
CGTCTCGACTTCCTCCCCCTCCATAGACATTGAAGATTCCGCTACTCTCAACAAGAAGAACCCAGTCTCCCGATCCTTGTTTCACACGTTCAGGAAGAAC
CAAGGCTTGTACGTCACCGATATCACTGCCGCGGAGTGGTGCGAGAAGCAAATGGAGTTTGTTCTTCTCGTCGGGAAAAGAAGAAGTACTGAAGCAATGA
AAGCAGGCAGTGCTCGCCATTTGAAGCTGGAACAAGAGATTGTGACGAAAGTTGAAGTTCAGGTAGAATCAATTGAAGATTCATGGGCTCTAAAGTTTGT
GAATTTCATCACTGGTGTCAACCAATTGTTGTTCCAAGGTCTAACCCGGGAGCTTCAGGTAATAGGCTTTGTTGAAGGAGTGTTCGTTGTGGGAAGGATA
GATGAGATCCGGATGACTGAAGGTGACGACGGTTGTAGGAGGCCGATGCTAGTCGACACAAAGACTCGTGCCCGCGACACTTTTCCATCTGAACCTCAAA
CCAGGAACGGAAGACTGCAACTGATGTGCTACAAGTATATATGGGACTCTCTTGTCGCTGATAACTTTCCCGCCGAGCAATTCTACGATTTCTTTTCCTT
GAATCGCAAATCCATTTTGTGCCAAGAGATCAGGGAGACTGCTAAAGAAGCAGGCATCCCAGCCGCAGAGACCCTGGACGACATCGTTAAATACTTCACA
AACACAAGTTGTATCTTACTCCCCGCCGATGACCGAATGTTACTAAGATACGAGCTGCAGAAGGACAACTCCCTGCTGTGTGAAGACGTGTTCATATATG
AGTTTGATTGGGTGAAGAGTCAAATTCAAGCATCCTTGGAGTTCTGGTTTAGTAAGCGGGAAGCTGGATGCACTCCAGAGGATGAGCGCTGGAAATGCAG
GTTCTGTCAGTTTGCAGACGTTTGCCCCACGAATCCCATGTTTGTTAAAGAAATGTAA
AA sequence
>Lus10038466 pacid=23158112 polypeptide=Lus10038466 locus=Lus10038466.g ID=Lus10038466.BGIv1.0 annot-version=v1.0
MTHSSSPSSTPLQDPNINVSTPNPTISGIAIEIVSDEEMAFYEAAAAMAVTHSSSFSSSSSSSSKSSVSTSSPSIDIEDSATLNKKNPVSRSLFHTFRKN
QGLYVTDITAAEWCEKQMEFVLLVGKRRSTEAMKAGSARHLKLEQEIVTKVEVQVESIEDSWALKFVNFITGVNQLLFQGLTRELQVIGFVEGVFVVGRI
DEIRMTEGDDGCRRPMLVDTKTRARDTFPSEPQTRNGRLQLMCYKYIWDSLVADNFPAEQFYDFFSLNRKSILCQEIRETAKEAGIPAAETLDDIVKYFT
NTSCILLPADDRMLLRYELQKDNSLLCEDVFIYEFDWVKSQIQASLEFWFSKREAGCTPEDERWKCRFCQFADVCPTNPMFVKEM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G60370 unknown protein Lus10038466
[exp]
0 1
AT5G58600 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44... Lus10031301
[exp]
3.5 0.8274
AT3G53320 unknown protein Lus10026478
[exp]
5.0 0.8029
AT3G53900 UPP, PYRR PYRIMIDINE R, uracil phosphori... Lus10012654
[exp]
6.3 0.7849
AT2G26970 Polynucleotidyl transferase, r... Lus10037420
[exp]
9.5 0.8098
AT4G15570 MAA3 MAGATAMA 3, P-loop containing ... Lus10038906
[exp]
10.0 0.7400
AT4G24265 unknown protein Lus10007441
[exp]
10.7 0.8131
AT1G28610 GDSL-like Lipase/Acylhydrolase... Lus10010208
[exp]
11.0 0.7573
AT4G22130 SRF8 STRUBBELIG-receptor family 8 (... Lus10015549
[exp]
12.0 0.7633
AT4G38380 MATE efflux family protein (.1... Lus10014441
[exp]
17.1 0.7431
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Lus10028934
[exp]
22.5 0.7624

Lus10038466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.