Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038470 [exp] 529 / 0 ND / Lus10038967 [exp] 199 / 7e-60 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10027258 [exp] 182 / 5e-56 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10006513 [exp] 182 / 4e-55 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10038935 [exp] 175 / 7e-53 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 172 / 6e-51 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10035564 [exp] 157 / 3e-46 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10024702 [exp] 150 / 3e-43 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10023341 [exp] 150 / 1e-41 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 62 / 5e-11 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038468 pacid=23158270 polypeptide=Lus10038468 locus=Lus10038468.g ID=Lus10038468.BGIv1.0 annot-version=v1.0 ATGAGTTCCCATTCTCACTTTCAGTGGGAGCTCGGTGGAGCATACATGGAACAAGTTCTATCCCTCCGTTCTGACCCTAGTAGCGTCACAAGGGTTACAT TGGACGTCTGGGTAGAAAAGAGGAAGGATTTGTTGGATAGGTTCATGAAATACGCCGCTTCCCATGGCGTTCAAGAGCTATCAATTTCCACTCAATTCAT CCAATCCCCCGGTGTTTCTGGATCGGTATACCCCTGTTATCGATCTCTGAAAGTTCTCGAGTTGCAGCTAACGGATATAGAACAAATTGATGTTGGATTG TGGTCTCGCTTCCAACTGCTCGAATCTCTTACTCTGCCTTGCTGCTTCTTCCCCTCTGGTGGTGATTTTGCTAACTTCCCCAAATTGGAAACCCTGAAGC TGGTCAGTTCGGGTAGCAAATCCGAGACCGGTGTTCTGAAAGTAACTGGCCCCAAACTGCTTAACTTGGAGATCGTTTGGCCGTTAGTCGACAGTCTTGA AATTGTCGCTCCCAAGCTTCGATCTTTCACTCTTAAGATTAATCGTTTGTATACGTTACGACCACTAGACATGTGCAGGTCGGATCTTGCATCCCTTGTT CGTGCAAACATCACGCCGTTTGGCTACAAGCATTACATGGTTAGTGACAATGATATAGCCGAGAAGCAACTGCAACTGCTGCTCAAGAACTTGTTCAATG TTCTGCACAATGTGCAGGCTCTCAGTCTGGAGGTCGAAATCTTTGAGGTATGTTGTTGGATAGTTTTAAAGACATTCGGCCTCGTTCGCCCTATGTTGTG TATTGAATTTCGTTTATTGTTGTTCTGA
AA sequence Show only first row Show all	>Lus10038468 pacid=23158270 polypeptide=Lus10038468 locus=Lus10038468.g ID=Lus10038468.BGIv1.0 annot-version=v1.0 MSSHSHFQWELGGAYMEQVLSLRSDPSSVTRVTLDVWVEKRKDLLDRFMKYAASHGVQELSISTQFIQSPGVSGSVYPCYRSLKVLELQLTDIEQIDVGL WSRFQLLESLTLPCCFFPSGGDFANFPKLETLKLVSSGSKSETGVLKVTGPKLLNLEIVWPLVDSLEIVAPKLRSFTLKINRLYTLRPLDMCRSDLASLV RANITPFGYKHYMVSDNDIAEKQLQLLLKNLFNVLHNVQALSLEVEIFEVCCWIVLKTFGLVRPMLCIEFRLLLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038468 [exp]	0	1
					Lus10038470 [exp]	1.0	0.9471
					Lus10027245 [exp]	4.1	0.6770
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	6.2	0.7840
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10024902 [exp]	7.2	0.6851
AT3G52260			Pseudouridine synthase family ...		Lus10040385 [exp]	10.4	0.7061
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	11.0	0.7351
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	16.9	0.7022
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	19.4	0.7182
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10014242 [exp]	21.2	0.6691
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	24.3	0.7032

Compare expression of checked genes

Lus10038468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.