Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49900 223 / 6e-67 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 198 / 4e-58 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 179 / 2e-51 Beta-glucosidase, GBA2 type family protein (.1) AT3G24180 157 / 7e-44 Beta-glucosidase, GBA2 type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038471 [exp] 447 / 7e-152 AT5G49900 1201 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10023340 [exp] 358 / 9e-118 AT5G49900 1217 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10002950 [exp] 207 / 4e-61 AT5G49900 1216 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10003517 [exp] 199 / 3e-58 AT5G49900 1191 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10000757 [exp] 158 / 5e-44 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003400 [exp] 266 / 5e-83 AT5G49900 1298 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.004G227200 [exp] 252 / 1e-77 AT5G49900 1284 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.019G072800 [exp] 228 / 7e-69 AT5G49900 1219 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G178000 [exp] 156 / 3e-43 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF04685 [flax] [poplar] DUF608 Glycosyl-hydrolase family 116, catalytic region
Representative CDS sequence Show only first row Show all	>Lus10038469 pacid=23158486 polypeptide=Lus10038469 locus=Lus10038469.g ID=Lus10038469.BGIv1.0 annot-version=v1.0 ATGGAAAATTATGGAACGGGTCCTACTTCGATTACGACAACAGTGGTAGTCGAAACAGTAAATCGATTCAAGCTGATCAGCTCGCTGGACAGTGGTACGT ATGCACTAGCGTGTGGGCTTCTTCCAATAGTTGACAAGGCGAAGGCACAAAGTGCACTGGAGAAAGTGTTCAACTTCAATGTGATGAAGGTGAAAGACGG TAAGCGTGGGGCTGTGAACGGAATGCTACCCGATGGTACCGTCGACATGTTGAACACACAGTCGAGAGAGATATGGTCCGGGGTGACGTACGCAGTTGCA GCATCGATGATTCAAGAAGGGCTGACCGATATGGGATTCAAGACTGCTAGCGGAGTTTACCAAACTTCATGGTCCGAAAGAGGACTCGGCTTTGACATTT TCCATGGAGCTTCCGATCATCCTAGTTCTGCTATTTACTGGGTTCATATGCTTTTCCTGGATAGGTATGGGTTTCAGACTCCGGAAGCATGGAATACCGA CGATCAGTACCGATCGCTGTGCTACATGAGGCCGTTGGCTATTTGGGCGATGCAGTGGGAGTTTTCAAGAAAGAAACTTGAGCAACAAGAAATGAAGGGT CCCGTTATGGAAGATTACCCGTTTGCAGAGGATGCCGGATTCGCCAAGGTGGCTAGATTCCTCAGGTTACCGGAGTTGAATCAGTCGAAAAGCCTGTTCC AGACAGTGTACGACTATGCTTCCAAGAAACTGGGATATTGA
AA sequence Show only first row Show all	>Lus10038469 pacid=23158486 polypeptide=Lus10038469 locus=Lus10038469.g ID=Lus10038469.BGIv1.0 annot-version=v1.0 MENYGTGPTSITTTVVVETVNRFKLISSLDSGTYALACGLLPIVDKAKAQSALEKVFNFNVMKVKDGKRGAVNGMLPDGTVDMLNTQSREIWSGVTYAVA ASMIQEGLTDMGFKTASGVYQTSWSERGLGFDIFHGASDHPSSAIYWVHMLFLDRYGFQTPEAWNTDDQYRSLCYMRPLAIWAMQWEFSRKKLEQQEMKG PVMEDYPFAEDAGFAKVARFLRLPELNQSKSLFQTVYDYASKKLGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10038469 [exp]	0	1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10038471 [exp]	1.4	0.8780
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	24.6	0.8339
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10025986 [exp]	38.4	0.7698
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10036773 [exp]	71.0	0.7663
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10013959 [exp]	95.9	0.7672
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	123.5	0.7650
AT1G15190			Fasciclin-like arabinogalactan...		Lus10023801 [exp]	127.9	0.7273
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	161.8	0.7100
					Lus10000768 [exp]	178.9	0.7079
AT4G17250			unknown protein		Lus10000731 [exp]	180.8	0.6989

Compare expression of checked genes

Lus10038469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.