Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49900 1090 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 951 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 888 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT3G24180 714 / 0 Beta-glucosidase, GBA2 type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023340 [exp] 1709 / 0 AT5G49900 1217 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10002950 [exp] 986 / 0 AT5G49900 1216 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10003517 [exp] 970 / 0 AT5G49900 1191 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10000757 [exp] 717 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2) Lus10038469 [exp] 450 / 3e-152 AT5G49900 223 / 1e-69 Beta-glucosidase, GBA2 type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227200 [exp] 1169 / 0 AT5G49900 1284 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G003400 [exp] 1169 / 0 AT5G49900 1298 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.019G072800 [exp] 1055 / 0 AT5G49900 1219 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G178000 [exp] 732 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF04685 [flax] [poplar] DUF608 Glycosyl-hydrolase family 116, catalytic region CL0103 [flax] [poplar] Gal_mutarotase PF12215 [flax] [poplar] Glyco_hydr_116N beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Representative CDS sequence Show only first row Show all	>Lus10038471 pacid=23158265 polypeptide=Lus10038471 locus=Lus10038471.g ID=Lus10038471.BGIv1.0 annot-version=v1.0 ATGGTGGAGAATGGTGATCGGAACAATGTGGCTTCGAAGAAGTCCGAGAACAAAGTTGATCCTGGGAAACCTGCAATCCTTACTTGGCAGAGGAAGCTGA ACACTCAGCTCACGCGCCTTAGACAGTTCCGCCTGACACTTAATGAGACAGTTCAGCTGACCCCTATGTGTTTTCGACTGGAGCGTTATAAACGCGAAGA AATTGCGAAAGGCCGGGATGGCTTTTTCATTAATCCATTTGGTAAGCGGCACATAACATCTAGTCATGGTGTACCCCTAGGTGGCATAGGTTCCGGAAGC ATTGGAAGAAGTTTCAGAGGCGAATTCCAGCGCTGGCAACTGTCCCCTGGAATGTGCGAAGGAGCACCTGTTCTGGCTAATCAGTTTTCTGCTTTTGTAT CTCGTTCCAATGGCCGAAAGTACTCCAGTGTACTGTGTCCAAGGGGCCCTGATATGATAATAGAACTTACTATAGCTCTCCTCAGAGATCCTGCAGTTTC TGGGATTGGATCTTGGGACTGGAAGCTCAAGGGTGATAAATCTACGTACGATGCTTTATACCCAAGGGCTTGGACTACGTATGAGGGAGAACCTGATCCA CAACTAAAAATCGTTTGTCGTCAACTTTCTCCAGTAATTCCTCATAATTACAAGGAGAGTAGCTATCCGGTTGCTGTTTTCACTTTCACGCTCCATAATA CAGGACAAACTGCTGCAGATGCATCTCTCCTTTTTACATGGGCAAACTCCGTGGGAGGTGATTCTGGATCCTCTGGCCAACACGTAAATTCCACTGAAAC GAGGGAGGACGGCGTACATTGCATACTTCTGCATCACAGGACAGCAAAAGAGTCCCCAATGACGTTTGCAATTGCTGCACAAGAGAGCACGGGTGTCAGA GTTTCCAAGTGCCCTCGCTTTATGATATCAGGCAACTTCGAAGGAGGGGTATCCGCGAAAGACATGTGGGATCACATAAAAAAGCATGGAACTTTTGACA ACCTTAAGCGTGCTACTGAAGTTTCTCAGCCTTCGGAGCCGGGATCGTCCATTGGGGCAGGCATTGCTGCCACTGCAACACTTCAACCCGATGAAGTTCG TACAATTACATTCTCCTTGGCGTGGGATTGCCCTGAAGCCAATTTTCAGGGTGGAAGGACCTACCACAGGCGTTATACGAAATTCTTCGGGGCTCATGGG AATGCTGCAGCAAACATCGCACACGAAGCGATTTTAAATCATAGTCACTGGGAGTCCCAGATAGAAGAGTGGCAAAGACCAATACTTGAAGATAAAACAT TTCCAGAATGTGTGGACAGGCATGTAGAACTCAGAGAAGTCTTCTATGGATCACCTCCAGTCCACAACTTAGAGACACTCGGGGATAGAAAATTTTCGCT TGATAATCCAGGAGTCGTTCTAGAAACGAAACGAAGCGTTACTGCTAGTTCGATGCTGGATAGTATGGCTTCAAAACTACGCCAGATTCATACTCCGGTA GCATCCAATTCAGCTATCGGGACTAATTTGCTCGACGAAGGAGAAGAAAACATCGGTCAGTTTCTGTACCTCGAAGGGATAGAGTACCTGATGTGGAACA CATACGATGTTCACTTCTACTCGTCTTTCGCGCTTGTTATGCTGTTTCCGAAACTCCAGCTCAGCGTTCAAAGGGACTTTGCGGCAGCAGTTCGCATGCA CGACCCGTCCAAAATGGTGGTACTTCACGATGGCCGGTGGGTCCCAAGAAAGGCTCTGGGCGCGGTTCCCCACGACATCGGACTTCACGATCCGTGGTTT GAAGTAAACGCGTATTGCCTTTACAATACGGACCGTTGGAAAGACTTGAACCTGAAATTCGTGCTCCAAGTGTACAGAGATGTGGTAGCCACTGGTGATA AGAAGTTTGCGAAAGCTGTTTGGCCCTCGGTTTATATGGCCGTGGCGTTCATGGATCAGTTCGATAAGGATCGAGATGGGATGATAGAAAATGAAGGCTT TCCTGATCAGACGTACGATACTTGGACGGTATCCGGTGTTAGTGCGTACACCGGAGGGTTGTGGGTTGCGGCTTTGCAGGCGGCATCAGCATTGGCAGGT TTAGTAGGGGATAAAGGTTCTCAAGTGCATTTCTGGTTTAAATTTCAGAAGGCGAAATCGGTATATGGAAAATTATGGAACGGGTCTTACTTCGATTACG ACAACAGTGGTAGTCGAAACAGTAAATCGATTCAAGCTGATCAGCTCGCTGGACAGTGGTATGCACTAGCGTGTGGGCTTCTTCCAATAGTTGACAAGGC GAAGGCACAAAGTGCACTGGAGAAAGTGTTCAACTTCAATGTGATGAAGGTGAAAGACGGTAAGCGTGGGGCTGTGAACGGAATGCTACCCGATGGTACC GTCGACATGTTGAACACACAGTCGAGAGAGATATGGTCCGGGGTGACGTACGCAGTTGCAGCATCGATGATTCAAGAAGGGCTGACCGATATGGGATTCA AGACTGCTAGCGGAGTTTACCAAACTTCATGGTCCGAAAGAGGACTCGGCTTTGACATTTTCCATGGAGCTTCCGATCATCCTAGTTCTGCTATTTACTG GGTTCATATGCTTTTCCTGGATAGGTATGGGTTTCAGACTCCGGAAGCATGGAATACCGACGATCAGTACCGATCGCTGTGCTACATGAGGCCGTTGGCT ATTTGGGCGATGCAGTGGGAGTTTTCAAGAAAGAAACTTGAGCAACAAGAAATGAAGGGTCCCGTTATGGAAGATTACCCGTTTGCAGAGGATGCCGGAT TCGCCAAGGTGGCTAGATTCCTCAGGTTACCGGAGTTGAATCAGTCGAAAAGCCTGTTCCAGACAGTGTACGACTATGCTTCCAAGAAACTGGGATATTG A
AA sequence Show only first row Show all	>Lus10038471 pacid=23158265 polypeptide=Lus10038471 locus=Lus10038471.g ID=Lus10038471.BGIv1.0 annot-version=v1.0 MVENGDRNNVASKKSENKVDPGKPAILTWQRKLNTQLTRLRQFRLTLNETVQLTPMCFRLERYKREEIAKGRDGFFINPFGKRHITSSHGVPLGGIGSGS IGRSFRGEFQRWQLSPGMCEGAPVLANQFSAFVSRSNGRKYSSVLCPRGPDMIIELTIALLRDPAVSGIGSWDWKLKGDKSTYDALYPRAWTTYEGEPDP QLKIVCRQLSPVIPHNYKESSYPVAVFTFTLHNTGQTAADASLLFTWANSVGGDSGSSGQHVNSTETREDGVHCILLHHRTAKESPMTFAIAAQESTGVR VSKCPRFMISGNFEGGVSAKDMWDHIKKHGTFDNLKRATEVSQPSEPGSSIGAGIAATATLQPDEVRTITFSLAWDCPEANFQGGRTYHRRYTKFFGAHG NAAANIAHEAILNHSHWESQIEEWQRPILEDKTFPECVDRHVELREVFYGSPPVHNLETLGDRKFSLDNPGVVLETKRSVTASSMLDSMASKLRQIHTPV ASNSAIGTNLLDEGEENIGQFLYLEGIEYLMWNTYDVHFYSSFALVMLFPKLQLSVQRDFAAAVRMHDPSKMVVLHDGRWVPRKALGAVPHDIGLHDPWF EVNAYCLYNTDRWKDLNLKFVLQVYRDVVATGDKKFAKAVWPSVYMAVAFMDQFDKDRDGMIENEGFPDQTYDTWTVSGVSAYTGGLWVAALQAASALAG LVGDKGSQVHFWFKFQKAKSVYGKLWNGSYFDYDNSGSRNSKSIQADQLAGQWYALACGLLPIVDKAKAQSALEKVFNFNVMKVKDGKRGAVNGMLPDGT VDMLNTQSREIWSGVTYAVAASMIQEGLTDMGFKTASGVYQTSWSERGLGFDIFHGASDHPSSAIYWVHMLFLDRYGFQTPEAWNTDDQYRSLCYMRPLA IWAMQWEFSRKKLEQQEMKGPVMEDYPFAEDAGFAKVARFLRLPELNQSKSLFQTVYDYASKKLGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10038471 [exp]	0	1
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10036773 [exp]	1.0	0.8966
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10038469 [exp]	1.4	0.8780
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10031437 [exp]	17.6	0.7366
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10025983 [exp]	17.8	0.7526
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	23.6	0.7902
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	24.9	0.8716
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	33.5	0.8441
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	34.2	0.7584
AT5G21970			Ubiquitin carboxyl-terminal hy...		Lus10016529 [exp]	34.5	0.7722
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10042080 [exp]	38.1	0.7882

Compare expression of checked genes

Lus10038471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.