Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45640 509 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT2G43790 478 / 4e-169 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT4G01370 450 / 9e-159 ATMPK4 MAP kinase 4 (.1) AT3G59790 444 / 6e-156 ATMPK10 MAP kinase 10 (.1) AT4G11330 437 / 1e-153 ATMPK5 MAP kinase 5 (.1) AT1G07880 426 / 2e-149 ATMPK13 Protein kinase superfamily protein (.1.2) AT1G01560 425 / 7e-149 ATMPK11 MAP kinase 11 (.1.2) AT2G46070 421 / 3e-147 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT2G18170 343 / 2e-116 ATMPK7 MAP kinase 7 (.1) AT4G36450 334 / 3e-113 ATMPK14 mitogen-activated protein kinase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023339 [exp] 665 / 0 AT3G45640 565 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10036136 [exp] 561 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 559 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10008339 [exp] 496 / 4e-176 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 496 / 4e-176 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10007921 [exp] 447 / 1e-157 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 441 / 7e-155 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 441 / 1e-154 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 437 / 1e-153 AT4G01370 630 / 0.0 MAP kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066100 [exp] 529 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 519 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.007G139800 [exp] 497 / 6e-177 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 492 / 6e-175 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.002G162500 [exp] 451 / 4e-159 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 444 / 2e-156 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 442 / 4e-155 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.003G131800 [exp] 441 / 1e-154 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.002G032100 [exp] 351 / 1e-119 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.005G231100 [exp] 350 / 4e-119 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038472 pacid=23158495 polypeptide=Lus10038472 locus=Lus10038472.g ID=Lus10038472.BGIv1.0 annot-version=v1.0 ATGATGGCAGGAAATCCGAACACCAACGGCGGATCAAGCAGTCAGTATCCTGATTCTCCGGCGACTCCTACTCACGGCGGCCGGTTCGTGCAGTATAACA TCTCCGGTCACCAATTTGACATTACTCCAAAATACCGGCCTCCGGTCAAGGCCATCGGGCGGGGGGCATATGGCTTCGTGTGTTCGATTGAGAATTTCAA AATGAGAGAAATGGTGGCTATAAAGAAGATAGCCAACTCGTTTGACAACAAATTGTACGCCAAACTCACCCTACGTGAGATCAAGGTGGTTGGGATTAGA GATGTAATTCCTCCACCAGTGAGGAAAGAATTTAACGACGTATACATAGTAACTGAGCTCATGAGCACGGATATGTCCCATGTTATACGTTCAAACCAGA GCTTAACTGAAGAGCATAACAAGTATTTCTTGTATCAGTTACTTCGAGGATTGAATTACATACACTCTGCTAATGTGATTCACCGAGATCTAAAACCCAG CAACATTCTCCTGAATGGAGGTTGTGACTTGAAGATCTGCGACTTCGGTATGGCCCGATCTGCACCGGAGACGAACGAGTCCATGACCGAATACGTCGTG ACGAGATGGTACCGGGCGCCCGAGCTTCTCCTCAACTCTCACGATTACACTTCAGCTATAGACGTCTGGTCCGTTGGCTGCATTTTCATGGAGCTTCTGA ACAGAAAGCCATTGTTCCCAGGCAAGGATCACTGCCATCAGATGCGCTTGATCACTGAGCTAATTGGTACACCAACTGAATCTGAGCTAGGGTTTGTAAA GAATGAGAATGCTAGAACGTATATCCGGCAGCTCACCCCGCGTCCTCGACAGCAATTAGCCGACGTTTTCCCCGACGTCGAACCTTTGGCCATCGATCTC ATCACAAGAATGCTGACATTCGATCCTACGGAACGAATAACCGTTGAGGAAGCAATAGCACACCCGTATTTCGAAAAATTGCACGACCTGGCTGACGAAC CGGTGTGCGAAAAGCCGTTCTCTTTCGATTTCGAGCAACAACAATTGGATGAGGAGCAGATCAAGGAGTTGATTTACAGGGAGGCGTTGGATTTTAATCC AAACTATGCATAG
AA sequence Show only first row Show all	>Lus10038472 pacid=23158495 polypeptide=Lus10038472 locus=Lus10038472.g ID=Lus10038472.BGIv1.0 annot-version=v1.0 MMAGNPNTNGGSSSQYPDSPATPTHGGRFVQYNISGHQFDITPKYRPPVKAIGRGAYGFVCSIENFKMREMVAIKKIANSFDNKLYAKLTLREIKVVGIR DVIPPPVRKEFNDVYIVTELMSTDMSHVIRSNQSLTEEHNKYFLYQLLRGLNYIHSANVIHRDLKPSNILLNGGCDLKICDFGMARSAPETNESMTEYVV TRWYRAPELLLNSHDYTSAIDVWSVGCIFMELLNRKPLFPGKDHCHQMRLITELIGTPTESELGFVKNENARTYIRQLTPRPRQQLADVFPDVEPLAIDL ITRMLTFDPTERITVEEAIAHPYFEKLHDLADEPVCEKPFSFDFEQQQLDEEQIKELIYREALDFNPNYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10038472 [exp]	0	1

Compare expression of checked genes

Lus10038472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.