Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45600 414 / 2e-147 TET3 tetraspanin3 (.1) AT5G60220 369 / 6e-129 TET4 tetraspanin4 (.1) AT2G23810 258 / 4e-86 TET8 tetraspanin8 (.1) AT4G28050 243 / 3e-80 TET7 tetraspanin7 (.1) AT4G30430 234 / 1e-76 TET9 tetraspanin9 (.1) AT5G46700 212 / 6e-68 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT3G12090 206 / 1e-65 TET6 tetraspanin6 (.1) AT1G18520 191 / 1e-59 TET11 tetraspanin11 (.1) AT2G19580 187 / 2e-58 TET2 tetraspanin2 (.1) AT4G23410 184 / 7e-57 TET5 tetraspanin5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023338 [exp] 432 / 2e-155 AT3G45600 347 / 1e-121 tetraspanin3 (.1) Lus10023216 [exp] 275 / 1e-92 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10008891 [exp] 273 / 7e-92 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 272 / 3e-91 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 263 / 1e-87 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10017336 [exp] 224 / 1e-72 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10008563 [exp] 216 / 1e-69 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10001668 [exp] 212 / 6e-68 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10007998 [exp] 187 / 4e-58 AT2G19580 369 / 6e-130 tetraspanin2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015100 [exp] 448 / 1e-160 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.006G177900 [exp] 250 / 5e-83 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.008G041600 [exp] 243 / 5e-80 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.018G099800 [exp] 241 / 2e-79 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.010G220300 [exp] 241 / 3e-79 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.003G093000 [exp] 223 / 5e-72 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 218 / 4e-70 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.001G141400 [exp] 206 / 2e-65 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.015G055700 [exp] 195 / 2e-61 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G107200 [exp] 164 / 4e-49 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10038473 pacid=23158487 polypeptide=Lus10038473 locus=Lus10038473.g ID=Lus10038473.BGIv1.0 annot-version=v1.0 ATGAGGGGCACAAACCACCTAATCGGAGTACTCAACTTCCTGACCTTCCTCCTCTCAATCCCAATAATCGGCGGCGGGATATGGCTAAGCAGCAAGGCCA GCTCCACCGACTGCCTCCGTTTCCTCCAGTGGCCAATCATCGTCATCGGAGTCTGCATCATGGTCGTCTCCTTGGCCGGATTCGCCGGCGCCTGCTACAG GAACACCATGCTGATGTGGATCTACCTATTCGTCATGTTCTTCGTCCTCGCCGCGCTCGTTGGGTTCATCATCTTCGCCTACTCGGTCACTGACAAAGGC GCTGGCCGCCCGTTGTTGAACAGGAACTACTTCGATTACTACCTCCAGGACTACTCCGGCTGGCTGGCGGATAGAGTCGCCAGTAATGGATACTGGATCA AGATCGCCTCCTGTGTGAGAGATTCCAAAGTGTGTGCTAAGATGGGGGTGAACTTTAATGGAATCCCTGAGTCTGCTGATATGTTCTATCGCAGGAGGCT TAGCCCCATCCAGTCGGGATGTTGCAAGCCGCCTACAGAATGCGGATTCTCCTACGTAAACGAGACCATATGGACATCGTCGGGGGGCATGGTGTACAAC CCGGACTGCAACACATGGAACAACGATCAGCAGGAACTGTGCTACTCTTGCAACTCCTGCAAGGCCGGCGTTCTAGCCAGCATCAAGAAGAGCTGGAGGA AGGTTTCCGTGATCAACATCGTTGTGTTGATCATCCTGGTCATCGTGTATGTGATTGGCTGCGCTGCCTTTAGGAACAATCGGCGGATGGATAACGACGA AGCTTATGGTGAAGCCAGGATGACTAAGGCACGGCCTAGTAGTCTGCACTTTTAG
AA sequence Show only first row Show all	>Lus10038473 pacid=23158487 polypeptide=Lus10038473 locus=Lus10038473.g ID=Lus10038473.BGIv1.0 annot-version=v1.0 MRGTNHLIGVLNFLTFLLSIPIIGGGIWLSSKASSTDCLRFLQWPIIVIGVCIMVVSLAGFAGACYRNTMLMWIYLFVMFFVLAALVGFIIFAYSVTDKG AGRPLLNRNYFDYYLQDYSGWLADRVASNGYWIKIASCVRDSKVCAKMGVNFNGIPESADMFYRRRLSPIQSGCCKPPTECGFSYVNETIWTSSGGMVYN PDCNTWNNDQQELCYSCNSCKAGVLASIKKSWRKVSVINIVVLIILVIVYVIGCAAFRNNRRMDNDEAYGEARMTKARPSSLHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45600		TET3	tetraspanin3 (.1)		Lus10038473 [exp]	0	1
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	2.4	0.8325
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	4.7	0.8216
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	7.5	0.8000
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	10.5	0.7396
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	11.8	0.7685
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	14.6	0.8003
					Lus10012234 [exp]	19.3	0.6474
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039024 [exp]	25.5	0.6667
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	25.9	0.7096
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	26.5	0.7338

Compare expression of checked genes

Lus10038473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.