Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52300 268 / 3e-93 ATPQ "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023337 [exp] 308 / 3e-109 AT3G52300 298 / 2e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10023492 [exp] 284 / 2e-99 AT3G52300 295 / 8e-104 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10040374 [exp] 283 / 2e-99 AT3G52300 293 / 3e-103 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043800 [exp] 282 / 9e-99 AT3G52300 291 / 3e-102 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Potri.010G217800 [exp] 275 / 4e-96 AT3G52300 281 / 1e-98 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05873 [flax] [poplar] Mt_ATP-synt_D ATP synthase D chain, mitochondrial (ATP5H)
Representative CDS sequence Show only first row Show all	>Lus10038474 pacid=23158187 polypeptide=Lus10038474 locus=Lus10038474.g ID=Lus10038474.BGIv1.0 annot-version=v1.0 ATGAGCGGAGCTGCGAAGAAGGTTACCGATGTGGCGTTCAAGGCTTCCAAGAACATCGATTGGGAAGGCATGGCCAAGCTCATAGTCTCCGACGAGGCTC GCAAGGAATTCGCCAATCTCCGCCGCGCCTTCGACGAAGTTAACTCTCAACTCCAGACCAAGTTTAGCCAGGAACCCGAACCCATAGACTGGGAATATTA CCGAAAGGGGATTGGGCCACGCTTGGTTGATATGTACAAGGAAGCATATGAAAGCATTGAGATACCCAAGTATGAAGACAAAGTCACTCCAGAGTACAAA CCAAAGTTTGATCAACTGATGGTGGAACTGAAAGAAGCAGAGCAAAAGTCTCTGAAAGAATCCGAAAGATTGGAGAAGGAAGTTGCTGAAGTGCAAGAGT TAAAGAAAAAGATCAGCACAATGACTGCCGATGAGTACTTTGAAAAGCACCCCGAGCTGAAGAAGAAGTTTGACGACGAAATCCGCAATGACTACTGGGG TTACTGA
AA sequence Show only first row Show all	>Lus10038474 pacid=23158187 polypeptide=Lus10038474 locus=Lus10038474.g ID=Lus10038474.BGIv1.0 annot-version=v1.0 MSGAAKKVTDVAFKASKNIDWEGMAKLIVSDEARKEFANLRRAFDEVNSQLQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYESIEIPKYEDKVTPEYK PKFDQLMVELKEAEQKSLKESERLEKEVAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	0	1
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	3.2	0.9396
AT1G30890			Integral membrane HRF1 family ...		Lus10027039 [exp]	3.2	0.9278
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039437 [exp]	3.7	0.9207
AT1G61150			LisH and RanBPM domains contai...		Lus10011219 [exp]	4.0	0.9178
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	4.9	0.9207
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	7.7	0.9231
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	8.1	0.9245
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	10.4	0.9235
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	10.5	0.8987
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	14.1	0.8858

Compare expression of checked genes

Lus10038474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.