Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60050 494 / 9e-172 BTB/POZ domain-containing protein (.1) AT1G63850 355 / 1e-116 BTB/POZ domain-containing protein (.1) AT3G50780 291 / 4e-92 unknown protein AT2G13690 236 / 7e-71 PRLI-interacting factor, putative (.1) AT3G05675 80 / 7e-16 BTB/POZ domain-containing protein (.1.2) AT3G19920 57 / 1e-08 unknown protein AT4G10800 45 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023336 [exp] 858 / 0 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 367 / 2e-120 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 360 / 3e-117 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 332 / 2e-106 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 292 / 4e-93 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 242 / 1e-75 AT3G50780 408 / 1e-140 unknown protein Lus10033484 [exp] 206 / 3e-59 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10020892 [exp] 201 / 2e-57 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 84 / 8e-17 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233900 [exp] 560 / 0 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 363 / 2e-118 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 342 / 3e-110 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 317 / 5e-102 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 313 / 7e-101 AT3G50780 623 / 0.0 unknown protein Potri.005G058700 [exp] 242 / 3e-73 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 235 / 1e-70 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 76 / 2e-14 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G086100 [exp] 76 / 2e-14 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.006G202900 [exp] 67 / 1e-11 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038475 pacid=23158328 polypeptide=Lus10038475 locus=Lus10038475.g ID=Lus10038475.BGIv1.0 annot-version=v1.0 ATGCCGACTTCCAAAGAGGTATCGGCAATGATACGACAAGGCTTCATTTCCGACCCAGCACTTTTCTTCTCCTCCTCATCACCAACTCCCACCACCACCG TCCTCGGTAGGGTTTTCGGCTCCCCCACCTCCAAAACCCTCTTCTCTCCGCCGCCCACTTTCACCTCAACCGCCACCGACTCCTCCTCCTCGCCGTCGCA CGCCGCGACTACTGCTCGTACCACTCACCAACAACCGACGCCCTCACAGACTCACCAACACCCGACGCTCTTCCAGATGATGTCGGAGGAGCAAGCCCTG GAGCAGTTCCGCCAGGGATCACAATCCAAAGTCTCCAAGATGCTTAGGGAGTTCGAAGCGTTGGCTTCGATGGGAATCGGGGACGTGAGGCTGACGGTGG TTGGGAGAGACGGCGACAAGATCTCCATCGACGTGCACAAGAGAGTTTTGGTGGAGATGAGCGGCTTCTTCAGGGAGAAATTGAAAGGGAGGGAGAAAGG GGTTATGATGCATTCCGTGGAGATAATTAGCGAGCTTGACGATGTTGAGATTTACTTGGAGGCTGTAGTTCTCATGTACTACTGTGATGATGATCTTATC AAGAGACTCCTTGGTGAGCCAGTCTCCAAGGTCTTGGCCTTGCTCAAGGTTTCTGCAGCAATCATGTTCGAGGTAGGAATGAAAGCATGCTTGGAATATT TGGAAGCAGTTCCGTGGACAGAGGACGAAGAAGAAAAGGTCATATCACATCTCTCTGAACTCGACCTTATAGATCCAGCAACCGAAGCTCTCCAGAGAGT ATCATGCCCGTTAACTTCTACCGCAGCAGTAGCAGCAGCTGATGACATCTTCGTAAACTTACTCAACGCCGTCCTGCTATCAAAGGACGAGAAAGCTCGC CGAGAAATGAAATCTCTACTCTCCCGTTTGTTCCGACACAATTCGTCCTATCACGACAACAAGCTAGACGTCTCAAAAGAAACCCTCTATTCTCTTTGCC ACAGATGTATCGATTCCCTAGCCTTATACTTGTCTGATGCATTAACAAGTGAAATAGCTCGAGAAGCCGAGAACTTGCAATGGATCGTCAGCATCCTGAT CGATAAAAAGCTGTGCGACGAATTCGTAAAGCTATGGGCCGATCAGAAGAAACTCGTATCCCTTCATTCGAAGATACCGGCAATGTACCGCCACGAAATC AGCAAGATTACAGCCCAACTATGCATCGGAATAGGAAGAGGGCAGATCATGGTTGGAACAGAGACTCGGTATGCATTGCTTTCGAATTGGTTGGAACCGC TGTACGAGGATTTCGGATGGATGAGAAGGGCGGTGGACAAGAAGCTGGTCGAGGATGGGATCGGCCAGACGATCTTGACCTTACCATTGCTTCGGCAGCA AGGAATATTGATGAACTGGTTTGACAGGTTTCTTAATAAGGGGGATGATTGCCCTAACATTCAAAGAGCGTTTGAGATTTGGTGGAGAAGAGCATTCGTT AGACAGTATTCACATGAGACGATGGGTGATTCGAAATTGCAGGTTACTGTTTGTGATTATCAAGATTGA
AA sequence Show only first row Show all	>Lus10038475 pacid=23158328 polypeptide=Lus10038475 locus=Lus10038475.g ID=Lus10038475.BGIv1.0 annot-version=v1.0 MPTSKEVSAMIRQGFISDPALFFSSSSPTPTTTVLGRVFGSPTSKTLFSPPPTFTSTATDSSSSPSHAATTARTTHQQPTPSQTHQHPTLFQMMSEEQAL EQFRQGSQSKVSKMLREFEALASMGIGDVRLTVVGRDGDKISIDVHKRVLVEMSGFFREKLKGREKGVMMHSVEIISELDDVEIYLEAVVLMYYCDDDLI KRLLGEPVSKVLALLKVSAAIMFEVGMKACLEYLEAVPWTEDEEEKVISHLSELDLIDPATEALQRVSCPLTSTAAVAAADDIFVNLLNAVLLSKDEKAR REMKSLLSRLFRHNSSYHDNKLDVSKETLYSLCHRCIDSLALYLSDALTSEIAREAENLQWIVSILIDKKLCDEFVKLWADQKKLVSLHSKIPAMYRHEI SKITAQLCIGIGRGQIMVGTETRYALLSNWLEPLYEDFGWMRRAVDKKLVEDGIGQTILTLPLLRQQGILMNWFDRFLNKGDDCPNIQRAFEIWWRRAFV RQYSHETMGDSKLQVTVCDYQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60050			BTB/POZ domain-containing prot...		Lus10038475 [exp]	0	1
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10014962 [exp]	4.0	0.8004
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Lus10016849 [exp]	6.2	0.7553
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10039105 [exp]	7.9	0.7864
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	8.5	0.7909
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	10.6	0.7852
AT2G22370			unknown protein		Lus10023150 [exp]	17.1	0.7652
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	26.9	0.7703
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042592 [exp]	28.9	0.7683
AT2G40815			Calcium-dependent lipid-bindin...		Lus10030501 [exp]	31.6	0.7582
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	31.7	0.7499

Compare expression of checked genes

Lus10038475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.