Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023333 [exp] 545 / 0 ND / Lus10031949 [exp] 386 / 9e-136 ND / Lus10005172 [exp] 193 / 3e-60 ND / Lus10038131 [exp] 112 / 7e-29 ND / Lus10027560 [exp] 44 / 8e-05 AT5G24090 295 / 4e-101 chitinase A (.1) Lus10010137 [exp] 41 / 0.0007 AT5G24090 330 / 1e-113 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102400 [exp] 365 / 3e-127 ND / Potri.015G100500 [exp] 342 / 3e-118 ND / Potri.001G341700 [exp] 331 / 4e-114 ND / Potri.015G100600 [exp] 311 / 2e-106 ND / Potri.005G059400 [exp] 183 / 4e-56 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10038478 pacid=23158377 polypeptide=Lus10038478 locus=Lus10038478.g ID=Lus10038478.BGIv1.0 annot-version=v1.0 ATGATTCCTACACTACTCCTCTGCCTCCTCGCCGGATTCTCCTCCCAAGCCGGAGCTCAACTCATCTTCCGAGAATACATCGGAGCAGAAGGCAACAACG TGAAATTCTCCGACGTACCGATCATCAACGACTCCCTCGAATTCCACTTCATCCTCTCCTTCGCCATCGACTACACCGCCGCCGGTTCGCCAACCAACGG AGTCTTCACCCCCTTTTGGGACACCGGCAACCTCGACGCTTCCCACGTCTCGTCGATCAAATCCCGCCACCCTAACCTTAAAGTCGCCGTGAGCCTAGGA GGCGACACGGTCGTCGATGACAAACACTTCGTCTTCTTCAAGCCTAAATCCATCGAATCCTGGCTCGGCAACGCGGTCCGAACCATCACGAAGTTGGTAC ACGATTACGATCTGGACGGGATCGACATCGACTACGAGCATTTCGATTCTCACCTCAATCCCGACACGTTCGCAGAATGCATCGGCGGCCTCCTGCAGAG ATTAAAGAGCCAGGGAGTCATCAAGTTCGCCTCGATCGCGCCGTTTGATGATGATGACGTGCAGAAGCATTACAAGGCGCTGTGGGCGAAGTACGGAGGT TTGATCGACTACGTGAATTTCCAATTCTACTCGTTCGACCAAGGGACGGATGTTGAGAAGTTCCTAAAGTTTTACGACGAGCAGAGTGGGAATTACGGTG GCGGGAAGGTGCTGGTGAGCTTTGCGACGGATGGCAGCGGAGGGTTGACGCCGGAGGGAGGGTTCTTCAAGGCGTGCGGTGAGCTGAAAAGGAAGAAGAA GCTTCACGGGATATTCATATGGTCGGCGGATGATTCTAAGAAGCTTAAGTTTAAGCCGGAGATTCAGTCGCAGAGTTTCCTCCTTGCTCCGAAGTAA
AA sequence Show only first row Show all	>Lus10038478 pacid=23158377 polypeptide=Lus10038478 locus=Lus10038478.g ID=Lus10038478.BGIv1.0 annot-version=v1.0 MIPTLLLCLLAGFSSQAGAQLIFREYIGAEGNNVKFSDVPIINDSLEFHFILSFAIDYTAAGSPTNGVFTPFWDTGNLDASHVSSIKSRHPNLKVAVSLG GDTVVDDKHFVFFKPKSIESWLGNAVRTITKLVHDYDLDGIDIDYEHFDSHLNPDTFAECIGGLLQRLKSQGVIKFASIAPFDDDDVQKHYKALWAKYGG LIDYVNFQFYSFDQGTDVEKFLKFYDEQSGNYGGGKVLVSFATDGSGGLTPEGGFFKACGELKRKKKLHGIFIWSADDSKKLKFKPEIQSQSFLLAPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038478 [exp]	0	1
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	3.5	0.8691
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	4.8	0.8747
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	6.5	0.8662
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	10.5	0.8599
AT3G52930			Aldolase superfamily protein (...		Lus10027717 [exp]	11.5	0.8271
AT3G52740			unknown protein		Lus10017046 [exp]	12.5	0.8609
AT3G52740			unknown protein		Lus10021366 [exp]	13.3	0.8506
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	16.2	0.8436
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031652 [exp]	16.3	0.8015
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10020656 [exp]	17.3	0.8289

Compare expression of checked genes

Lus10038478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.