Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62950 62 / 9e-12 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G12940 61 / 1e-11 Leucine-rich repeat (LRR) family protein (.1) AT5G20480 61 / 1e-11 EFR EF-TU receptor (.1) AT3G11080 61 / 1e-11 AtRLP35 receptor like protein 35 (.1) AT3G47570 60 / 4e-11 Leucine-rich repeat protein kinase family protein (.1) AT1G53440 60 / 4e-11 Leucine-rich repeat transmembrane protein kinase (.1) AT5G27060 60 / 5e-11 AtRLP53 receptor like protein 53 (.1) AT5G25930 60 / 5e-11 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G65710 59 / 6e-11 HSL2 HAESA-like 2 (.1) AT1G17230 59 / 9e-11 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033329 [exp] 89 / 2e-21 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 84 / 1e-19 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 77 / 6e-17 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 74 / 7e-16 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 74 / 1e-15 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035725 [exp] 67 / 1e-13 AT1G54850 132 / 1e-36 HSP20-like chaperones superfamily protein (.1) Lus10038392 [exp] 64 / 3e-12 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10024681 [exp] 60 / 3e-12 AT5G20480 82 / 3e-19 EF-TU receptor (.1) Lus10032306 [exp] 63 / 5e-12 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188700 [exp] 70 / 1e-14 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.017G151400 [exp] 69 / 4e-14 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 69 / 4e-14 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G027600 [exp] 67 / 1e-13 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.017G152500 [exp] 67 / 2e-13 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G010445 [exp] 66 / 4e-13 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.016G061500 [exp] 65 / 9e-13 AT1G53440 577 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.019G058600 [exp] 64 / 1e-12 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G070900 [exp] 64 / 2e-12 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G078400 [exp] 64 / 2e-12 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038479 pacid=23158451 polypeptide=Lus10038479 locus=Lus10038479.g ID=Lus10038479.BGIv1.0 annot-version=v1.0 ATGCAACTTGGTGGGCACTCTATCTCCGCACATTTCCAATATCACCTTCCTCCAAACCATCAACCTCGTGAACAACAGCTTCCACGGCCATATCCCTCCA CAAATCGGAAACCTCCGCCACCTCCAGCACTTAACTTATCGACAAACTTCTTCACGAGGCAGATTCCGCCGAACCTCACGCATTGCTTGGACCTCACGAC AATCCTGGTGGAAGCAAACGGTATCGAAGGAACAATTCCTCAAGATATCGGGCTTTTGTCGAAACCTACACGCTTCAGGATGGCATCCAACTTCCTGACA GGCCAGCTCCCAACTTCCTTGGAGAACCTGACACAGGTTGTGGAGTTTGCCGTTGCGTCTGATAATCTAGTCGGGGAAATTCCTGAAACAGTCCTTTTCC CCCGATTCATGTTTCAGGGTATTTATCAACTGGATCAAAGTCTGGTATAA
AA sequence Show only first row Show all	>Lus10038479 pacid=23158451 polypeptide=Lus10038479 locus=Lus10038479.g ID=Lus10038479.BGIv1.0 annot-version=v1.0 MQLGGHSISAHFQYHLPPNHQPREQQLPRPYPSTNRKPPPPPALNLSTNFFTRQIPPNLTHCLDLTTILVEANGIEGTIPQDIGLLSKPTRFRMASNFLT GQLPTSLENLTQVVEFAVASDNLVGEIPETVLFPRFMFQGIYQLDQSLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34110			Leucine-rich receptor-like pro...		Lus10038479 [exp]	0	1
					Lus10011078 [exp]	9.6	0.9224
					Lus10022518 [exp]	13.6	0.9224
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	16.6	0.9224
					Lus10029072 [exp]	19.2	0.9224
					Lus10003082 [exp]	21.4	0.9224
AT5G22450			unknown protein		Lus10000530 [exp]	23.5	0.9224
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	25.4	0.9224
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10004066 [exp]	27.1	0.9224
AT4G27790			Calcium-binding EF hand family...		Lus10005911 [exp]	28.8	0.9224
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10037874 [exp]	30.3	0.9224

Compare expression of checked genes

Lus10038479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.