Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28610 130 / 2e-37 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT3G18010 108 / 3e-28 HD WOX1 WUSCHEL related homeobox 1 (.1) AT3G11260 100 / 1e-26 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT5G59340 97 / 7e-25 HD WOX2 WUSCHEL related homeobox 2 (.1) AT5G05770 92 / 3e-24 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT1G46480 94 / 1e-23 HD WOX4 WUSCHEL related homeobox 4 (.1) AT2G17950 91 / 3e-22 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT2G01500 89 / 2e-21 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT2G33880 69 / 6e-14 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT5G45980 69 / 9e-14 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023332 [exp] 150 / 5e-47 AT2G28610 109 / 9e-31 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10028271 [exp] 103 / 3e-27 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10040219 [exp] 100 / 3e-26 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10024808 [exp] 100 / 1e-25 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10042007 [exp] 101 / 3e-25 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10018011 [exp] 100 / 5e-25 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10028457 [exp] 92 / 4e-22 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10041909 [exp] 92 / 4e-22 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10016569 [exp] 91 / 6e-22 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047700 [exp] 102 / 8e-26 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.015G039100 [exp] 100 / 2e-25 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.002G124100 [exp] 97 / 3e-25 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.014G025300 [exp] 97 / 4e-25 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.008G065400 [exp] 95 / 1e-24 AT3G11260 176 / 9e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.010G192100 [exp] 95 / 1e-24 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.005G114700 [exp] 96 / 3e-24 AT2G17950 129 / 1e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.007G012100 [exp] 94 / 2e-23 AT2G17950 126 / 9e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.010G111400 [exp] 94 / 5e-23 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.009G029200 [exp] 88 / 2e-21 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10038480 pacid=23158398 polypeptide=Lus10038480 locus=Lus10038480.g ID=Lus10038480.BGIv1.0 annot-version=v1.0 ATGTCTCCAGTAGCAGCATCAGGAACAGTACTAGCAGCATCACCAACTAACTCATCAGCATCAAGCAGATGGTGTCCAACGCCAGAGCAAGTGATGATAC TCGGGGAGCTTTACAGGAGTGGTGTGAGAACTGCCAACGCATCTCATATCCAGAGAATCACAGCTCACCTCTCTATGTATGGAAAGATCGAGGGCAAGAA CGTCTTTTACTGGTTCCAGAATCACAAGGCTAGGGACCGTCAGAAGCTCAGGAGGAAACTCATCAAGCAACTTCACCAGCATCAACATTTACCATCTTAT GATCATCATCAAAACCAGTACTCTACTAATCTTATTAATAATAACAGCTTTCTGCTTAACTACTTTGGATATGCTCCGACTCCATCTCATCCTCCACCTC ATCGTCTTCTTCACCAGGAAGGGAGATTTGGAGTTGAAAGAGGAGCATCATCATCATCCCAAGTGATTGTTGAAAGAGTAGAAGCTAATAGCAATGGCTA TGATGATGATAAACAACAGCCTATGATCAAGACTCTGCAACTCTTTCCAGTCAAGTCCACTAATCTTAAGGAGGACTAG
AA sequence Show only first row Show all	>Lus10038480 pacid=23158398 polypeptide=Lus10038480 locus=Lus10038480.g ID=Lus10038480.BGIv1.0 annot-version=v1.0 MSPVAASGTVLAASPTNSSASSRWCPTPEQVMILGELYRSGVRTANASHIQRITAHLSMYGKIEGKNVFYWFQNHKARDRQKLRRKLIKQLHQHQHLPSY DHHQNQYSTNLINNNSFLLNYFGYAPTPSHPPPHRLLHQEGRFGVERGASSSSQVIVERVEANSNGYDDDKQQPMIKTLQLFPVKSTNLKED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	0	1
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10033596 [exp]	3.7	0.9301
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	5.1	0.9362
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	6.2	0.8846
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	7.5	0.9275
					Lus10029057 [exp]	11.8	0.8826
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	14.8	0.9202
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	16.5	0.9088
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	16.6	0.9267
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040136 [exp]	16.7	0.8968
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	19.9	0.8491

Compare expression of checked genes

Lus10038480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.