Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07670 803 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 799 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT4G00900 638 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT1G10130 386 / 4e-120 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT1G27770 270 / 2e-77 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G22950 265 / 1e-75 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT5G57110 260 / 2e-73 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G37640 259 / 2e-73 ACA2 calcium ATPase 2 (.1) AT2G41560 255 / 5e-72 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G22910 214 / 8e-58 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023328 [exp] 1102 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10042843 [exp] 906 / 0 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10028139 [exp] 906 / 0 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10018668 [exp] 397 / 2e-124 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10007734 [exp] 397 / 3e-120 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10025199 [exp] 248 / 2e-69 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10031053 [exp] 240 / 8e-67 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 233 / 4e-64 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 232 / 6e-64 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G025700 [exp] 1206 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.001G233400 [exp] 825 / 0 AT1G07670 1800 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G101900 [exp] 620 / 0 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.014G014700 [exp] 537 / 1e-177 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.002G117400 [exp] 379 / 3e-117 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.010G250800 [exp] 266 / 1e-75 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 265 / 3e-75 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G159100 [exp] 219 / 1e-59 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G072900 [exp] 218 / 6e-59 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.013G040201 [exp] 216 / 9e-59 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10038484 pacid=23158147 polypeptide=Lus10038484 locus=Lus10038484.g ID=Lus10038484.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGAGGTGAGGACTCCGGTAAGAGTGAAAAACTCGGACTTGGATCGGAAAATCGCGGAGTGTTTCCAGCTTGGGCGAAAGACGTGAAGGAAT GCGAGGCTGAATACGAGGTGGACAGTCATTACGGGCTGTCGGTTGCGGAAGTGGCGAAGAGGCTCGAGATCCATGGTTACAACGAGTTGGAGAAGCACGA AGGGACCTCAATTTGGGAGTTGATAGTGGAGCAATTCAAGGACACTTTAGTTAGGATATTGTTGGCCGCTGCTGTCATATCTTTTGTTTTGGCTTGGTAT GATGGCAAGGAAGGCGGGGAGATGGAGATCACGGCTTTTGTGGAGCCCTTGGTGATTTTCTTGATATTGATTGTTAATGCGATCGTCGGGATTTGGCAGG AAAGCAATGCGGAGAAAGCATTGGAAGCGTTGAAGGAAATCCAGTCAGACACTGCCGCTGTTTTAAGAGATGGGAAAAAGATTTCAAGCTTGCCAGCAAA GGAACTTGTTCCTGGTGATATTGTGGAGTTGAGGGTAGGAGATAAGGTGCCTGCTGATATGCGGGTTTTGAGTTTGGTCAGCTCCACGGTGAGGGTTGAG CAAGGTTCTTTGACGGGAGAAAGTGAAGCTGTGAGCAAGACTGTTAAACCTGTTGCTGAGCATACAGATATCCAGGGGAAAAAATGTATGCTTTTTGCTG GAACCACGGTGGTGAATGGTAATTGCATGTGTTTGGTCACTGGGACTGGAATGAACACTGAGATAGGTAAGGTGCATTCACAAATTCATGAAGCCTCCCA ACACGAGGAAGATACCCCGTTGAAGAAGAAGTTGAATGAGTTTGGAGAGGCTCTAACCATGATTATTGGCGTTATTTGTGCATTGGTTTGGCTTATTAAT GTCAAGTACTTCCTCAGTTGGGAATACGTTGATGGCTGGCCCAGAAACTTCAAGTTCTCATTTGAGAAGTGCAGGATGGCTGTATCAAAGCTTGTGGCTA TGGGGTCCATGGCTGGAAATTTCCGATCATTTAATGTGGAGGGCACGACTTACAATCCATGTGATGGTAAAATTGAAGACTGGCCAGTTGGTCGAATGGA TTCTAACCTTCAGATGATCGCAAAGATTTCTGCCATTTGTAATGATGCTGGCGTAGAGCAATCAGGACAGCAATATATTTCTACTGGAATGCCTACAGAG GCTGCACTAAAGGTTTTGGTTGAGAAAATGGGGTTTCCTGGAGGAGTCAATAATGAATCTTCTTCTGTTAGTGGCGATATATTACGTTGCTCTAGCCTAT GGAATAGGATGGAACAACGATTTGCAACTCTAGAATTTGACCGAGACAGAAAATCAATGGGTGTCATTGTCAATTCTAGCTCCGGTAGAAAATTGCTATT CGTGAAGGGTGCTGTGGAGAACGTGTTGGAGAGAAGCACACATATTCAATTGCTCGATGGATCTACTGTAGAACTAGACCAATACTCAAGGGATCATATA TTACAGAGCCTTCACGACATGTCAACAACTGCACTACGATGCCTAGGATTTGCATACAAAGAGGATCTTCCAGAGTTTGACACATACAATGGTGATGAAG ACCATCCAGCTCATCAGCTGTTACTTAATCCAGCTAATTATTCCGACATCGAGAGTAAACTTGTGTTTGTTGGCTTGGCTGGGCTAAGGGACCCACCAAG GAAAGAAGTTCCTCAAGCAATTGAGGACTGCAGGGCTGCTGGAATCAGAGTTATGGTTATTACTGGAGACAACAAAAACACCGCAGAGGCAATTTGCCGT GAAATTGGTGTCTTCGGACGTTACGATGATATTAGTTTGAGAAGCTTTACTGGTAGAGATTTTATGGACCATCCCAACAAAAAGGAGGTTTTGAGACAAA GTGGAGGGCTTTTATTCTCTCGAGCAGAACCAAGGCACAAGCAAGAAATAGTGAGGTTGTTGAAAGAGGAAGGAGAGGTGGTTGCAATGACTGGAGATGG GGTGAATGATGCACCGGCTTTGAAGCTGGCTGACATCGGTATCGCAATGGGCATTTCCGGGACAGAGGTTGCAAAGGAAGCTTCAGATATGGTGTTGGCG GATGACAATTTCAGTACCATTGTTGCTGCTGTGGGTGAAGGCCGGTCTATTTACAATAACATGAAGGCATTTATCAGGTACATGATATCTTCAAACATGG GTGAGGTTGCATCCATATTCTTGACAGCGGCTTTGGGTATTCCGGAGGGGATGATTCCGGTCCAACTATTATGGGTTAATCTCGTCACCGACGGGCCACC TGCAACAGCTTTAGGATTCAACCCGGCTGACAAGGACATAATGAAGAAGCCTCCCAGAAGAAGCAATGATTCTTTGATCACCGCCTGGATATTATTCCGC TACCTGGTACAGGAACATACATAA
AA sequence Show only first row Show all	>Lus10038484 pacid=23158147 polypeptide=Lus10038484 locus=Lus10038484.g ID=Lus10038484.BGIv1.0 annot-version=v1.0 MGRGGEDSGKSEKLGLGSENRGVFPAWAKDVKECEAEYEVDSHYGLSVAEVAKRLEIHGYNELEKHEGTSIWELIVEQFKDTLVRILLAAAVISFVLAWY DGKEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALKEIQSDTAAVLRDGKKISSLPAKELVPGDIVELRVGDKVPADMRVLSLVSSTVRVE QGSLTGESEAVSKTVKPVAEHTDIQGKKCMLFAGTTVVNGNCMCLVTGTGMNTEIGKVHSQIHEASQHEEDTPLKKKLNEFGEALTMIIGVICALVWLIN VKYFLSWEYVDGWPRNFKFSFEKCRMAVSKLVAMGSMAGNFRSFNVEGTTYNPCDGKIEDWPVGRMDSNLQMIAKISAICNDAGVEQSGQQYISTGMPTE AALKVLVEKMGFPGGVNNESSSVSGDILRCSSLWNRMEQRFATLEFDRDRKSMGVIVNSSSGRKLLFVKGAVENVLERSTHIQLLDGSTVELDQYSRDHI LQSLHDMSTTALRCLGFAYKEDLPEFDTYNGDEDHPAHQLLLNPANYSDIESKLVFVGLAGLRDPPRKEVPQAIEDCRAAGIRVMVITGDNKNTAEAICR EIGVFGRYDDISLRSFTGRDFMDHPNKKEVLRQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGIAMGISGTEVAKEASDMVLA DDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNMGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPADKDIMKKPPRRSNDSLITAWILFR YLVQEHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10038484 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	5.9	0.8507
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	6.9	0.8620
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	7.2	0.8664
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10027310 [exp]	7.5	0.8419
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	8.8	0.8588
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10028710 [exp]	10.6	0.8319
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	11.0	0.8038
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022988 [exp]	12.6	0.8103
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	14.7	0.8566
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	15.5	0.8417

Compare expression of checked genes

Lus10038484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.