Plant FIBer expression Database

Lus10038485 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02640 67 / 2e-14 unknown protein
AT3G46300 45 / 3e-06 unknown protein
AT3G46310 44 / 5e-06 unknown protein
AT5G26731 40 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023327
[exp]
253 / 2e-87 AT5G02640 79 / 3e-19 unknown protein
Lus10037654
[exp]
109 / 3e-31 ND 41 / 2e-05
Lus10015636
[exp]
92 / 3e-24 ND /
Lus10025282
[exp]
82 / 5e-20 AT5G02640 130 / 4e-39 unknown protein
Lus10009066
[exp]
70 / 1e-15 AT5G02640 107 / 8e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G081600
[exp]
87 / 2e-22 AT5G02640 144 / 1e-44 unknown protein
Potri.006G215000
[exp]
85 / 1e-21 AT5G02640 144 / 1e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10038485 pacid=23158160 polypeptide=Lus10038485 locus=Lus10038485.g ID=Lus10038485.BGIv1.0 annot-version=v1.0
ATGGCGTCTGCTTGCATATCGAGCTGCTTGAATGACGTGGCGGTCCACCTTCCTACGACGACGTCGTTGAGATACGCCAGGCTCTCGGTCCCGGACCAAC
CGGAGACGCCGGGAGAGTCCGGGAGGTTCGCGAGCTTCGAAGAGAGGTGTCGAGGACATCCGAAAGTGGTGGACAGTATCTCCTGCAGGCAGCTGTACCT
TAGGAGCTACACCTTCTCCAGGAAGGAGAGCTTCTCGGACAAGACCAAGCGTTGCGTCGGGAAAGTTACGGAGAGCGTGAAGAAGAACAAGAGGAAGGAC
AAGAAGAAGAAGAAGAAGAAGGGGAGTGCGGCGGTGGTTGTGAGGAGGAGGAATTCGACGGCGGCCATGATTTGTTTGAGGAAGGCGAGTAAGGTGACGT
GTACTGCTGTGATGAAGGTGGTAAGGAGACTCCTGATGTCTTGCACTACCAGGGTTAATACGGCGGCGGATTGA
AA sequence
>Lus10038485 pacid=23158160 polypeptide=Lus10038485 locus=Lus10038485.g ID=Lus10038485.BGIv1.0 annot-version=v1.0
MASACISSCLNDVAVHLPTTTSLRYARLSVPDQPETPGESGRFASFEERCRGHPKVVDSISCRQLYLRSYTFSRKESFSDKTKRCVGKVTESVKKNKRKD
KKKKKKKGSAAVVVRRRNSTAAMICLRKASKVTCTAVMKVVRRLLMSCTTRVNTAAD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02640 unknown protein Lus10038485
[exp]
0 1
Lus10033259
[exp]
2.4 0.9250
AT2G36870 XTH32 xyloglucan endotransglucosylas... Lus10021422
[exp]
3.0 0.9110
AT2G47000 PGP4 ,MDR4, ABC... MULTIDRUG RESISTANCE 4, ARABID... Lus10004520
[exp]
5.2 0.8922
Lus10014090
[exp]
6.1 0.8491
AT3G27890 NQR NADPH:quinone oxidoreductase (... Lus10026172
[exp]
7.5 0.8942
AT5G50260 CEP1 cysteine endopeptidase 1, Cyst... Lus10013674
[exp]
7.7 0.9203
AT5G05970 NEDD1 NEURAL PRECURSOR CELL EXPRESSE... Lus10040260
[exp]
13.6 0.8654
AT3G11340 UGT76B1 UDP-dependent glycosyltransfer... Lus10004672
[exp]
17.3 0.8990
AT1G70670 AtCLO4 Arabidopsis thaliana caleosin ... Lus10014588
[exp]
17.7 0.8963
AT5G50770 ATHSD6 hydroxysteroid dehydrogenase 6... Lus10022441
[exp]
21.6 0.9063

Lus10038485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.