Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50440 112 / 3e-30 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23560 86 / 2e-20 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23550 81 / 9e-19 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23600 81 / 1e-18 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23610 79 / 5e-18 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT4G37150 78 / 1e-17 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23580 77 / 2e-17 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT4G37140 75 / 2e-17 ATMES20, MEE69 MATERNAL EFFECT EMBRYO ARREST 69, ARABIDOPSIS THALIANA METHYL ESTERASE 20, alpha/beta-Hydrolases superfamily protein (.1) AT1G33990 77 / 6e-17 ATMES14 methyl esterase 14 (.1) AT2G23620 76 / 1e-16 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023326 [exp] 208 / 4e-68 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10019645 [exp] 95 / 4e-25 AT2G23600 139 / 7e-42 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10012854 [exp] 87 / 5e-22 AT2G23600 147 / 2e-45 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 88 / 3e-21 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 85 / 6e-20 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10005402 [exp] 75 / 4e-16 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005400 [exp] 74 / 4e-16 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10003511 [exp] 71 / 1e-14 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10038592 [exp] 69 / 3e-14 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G107200 [exp] 94 / 2e-23 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G037700 [exp] 92 / 9e-23 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.009G107500 [exp] 92 / 2e-22 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G037300 [exp] 91 / 2e-22 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G036700 [exp] 91 / 3e-22 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G036800 [exp] 90 / 1e-21 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.005G133900 [exp] 82 / 6e-19 AT2G23620 251 / 3e-84 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037100 [exp] 81 / 7e-19 AT2G23620 235 / 1e-77 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 81 / 8e-19 AT2G23590 254 / 4e-85 methyl esterase 8 (.1) Potri.007G037033 [exp] 81 / 1e-18 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10038486 pacid=23158471 polypeptide=Lus10038486 locus=Lus10038486.g ID=Lus10038486.BGIv1.0 annot-version=v1.0 ATGGTAGACATTATAAAAGGTTATGTTATGTATGATTGGCAAGCCCTGCTTCCAGCTCGCGACCATGTTGAAGTTGCCTGTCTTATCAACATCTCTGTTG TCGACATTCGCAAGGGACAGTTGCTACTTGAATGCCGCTCACTCGCTCTTTCATCGTATGATAATTACACCGTTCATTTAGTAGCACGTGAATCTTTTCG TTATCCTACAGGCATCAACTTGGATCAAGTTTCTTCTCCCATCTCCGATTACGTGAAGCCACTGATTGAGTTCATGGCCTCACTTCCGGAACAAGACAAG GTCATCCTCGTTGGTCATAGCTTCGGTGGGATATCTATCTCCCTCGCCATTGAACAATTTCCGACCAAGGTCCTTGCTGCTGTTTTTGTCACGGCTATAA TGCCTGGCTTCAACTCCCCTCCGGCTGATGTGATTGTTTGGTTTTTCAGAAGGACGCCGGCGGAGTCACAAATGGACAGTCAGGTCAACATCGCAGATGG ACCTGAAAACCTACCGACATCAGCCTTGTTTGGATCCTCTCACGTGGCTCAACGTATCTAG
AA sequence Show only first row Show all	>Lus10038486 pacid=23158471 polypeptide=Lus10038486 locus=Lus10038486.g ID=Lus10038486.BGIv1.0 annot-version=v1.0 MVDIIKGYVMYDWQALLPARDHVEVACLINISVVDIRKGQLLLECRSLALSSYDNYTVHLVARESFRYPTGINLDQVSSPISDYVKPLIEFMASLPEQDK VILVGHSFGGISISLAIEQFPTKVLAAVFVTAIMPGFNSPPADVIVWFFRRTPAESQMDSQVNIADGPENLPTSALFGSSHVAQRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10038486 [exp]	0	1
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	4.0	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	5.7	1.0000
					Lus10010778 [exp]	6.2	1.0000
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	8.0	1.0000
					Lus10011496 [exp]	9.7	1.0000
					Lus10011061 [exp]	10.4	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	12.7	1.0000
					Lus10011759 [exp]	13.9	1.0000
					Lus10022145 [exp]	14.4	1.0000
AT4G29340		PRF4	profilin 4 (.1)		Lus10043041 [exp]	15.5	1.0000

Compare expression of checked genes

Lus10038486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.