Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59700 273 / 3e-83 Protein kinase superfamily protein (.1) AT3G46290 267 / 4e-81 HERK1 hercules receptor kinase 1 (.1) AT5G61350 238 / 4e-70 Protein kinase superfamily protein (.1) AT4G00300 222 / 4e-67 fringe-related protein (.1.2) AT5G24010 200 / 2e-56 Protein kinase superfamily protein (.1) AT5G54380 197 / 4e-55 THE1 THESEUS1, protein kinase family protein (.1) AT4G39110 191 / 3e-53 Malectin/receptor-like protein kinase family protein (.1) AT2G39360 188 / 3e-52 Protein kinase superfamily protein (.1) AT2G21480 184 / 1e-50 Malectin/receptor-like protein kinase family protein (.1) AT1G30570 170 / 9e-46 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028140 [exp] 421 / 1e-139 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 419 / 3e-139 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10023325 [exp] 355 / 4e-122 AT3G46290 116 / 9e-30 hercules receptor kinase 1 (.1) Lus10018823 [exp] 204 / 2e-60 AT4G00300 401 / 2e-136 fringe-related protein (.1.2) Lus10037887 [exp] 208 / 3e-59 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10030308 [exp] 206 / 2e-58 AT3G46290 735 / 0.0 hercules receptor kinase 1 (.1) Lus10003312 [exp] 204 / 9e-58 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 203 / 2e-57 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10005120 [exp] 192 / 2e-55 AT4G00300 413 / 6e-141 fringe-related protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234200 [exp] 317 / 1e-99 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 314 / 7e-99 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.010G213200 [exp] 261 / 6e-79 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.014G088100 [exp] 222 / 4e-67 AT4G00300 420 / 1e-143 fringe-related protein (.1.2) Potri.015G061700 [exp] 211 / 3e-60 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 208 / 2e-59 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.017G143049 [exp] 200 / 2e-56 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G158700 [exp] 197 / 3e-55 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.001G405500 [exp] 196 / 9e-55 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G120400 [exp] 189 / 1e-52 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10038487 pacid=23158181 polypeptide=Lus10038487 locus=Lus10038487.g ID=Lus10038487.BGIv1.0 annot-version=v1.0 ATGGTTTTGGTCTGGATCTCCCTCTTGAGTTTTCTGATTCTGATGCCACGTTACTCCGAATGTTTCGTCCCTACAGACAACTACCTGATAAACTGCGGAT CAGAAACCGATACTCCGGTTGATAACCGTGTCTTTCTAGCCGATAAATCAGATTCAACCTTCCTCTCAACTCCCAATCACATCACGGCCAACTACACCAC TAACTGCACGCAACAACTCACCTCGGAAGATTCGATTCTCTACCAGACCGCGAGAATCTTCGACCGGAAATCGACCTACACTTTCCCGATCAAGCAACAG GGCAGGCATTTCGTCCGCCTCTACTTCCACCCGTTCGTCTACTCAAACTACAACATGTTCCAAGCCAGCTTCGACGTGTCCACCGCGAACCAGAGCCTTC TCAGCAACTTCAGTGTCAATGGCACTTTCACTACCACGCTAGTGCTCAAGGAGTTCTCGTTGAACCTAGCGTCGTCGAGTAGCCTCGCCATCACCTTTGC GCCTTCCCCGAATTCGTTCGCGTATGTCAACGCGTTGGAAGTGGTTTCGGTCCCCGATTACCTCATCAAAGAAGGTACTGCCACGTCTTACGGTACTCCT GATCAAACGGCCGAGTTCCAAGGAATGACGTCACAGTCACTCGAAACATCATACCGGGTGAACATGGGCGGGTCAATGCTCAACTATTCGAACGACACCT TATGGCGGACTTGGGTTACGGATCGTGCATTTCAAATCAACCCCAGTTCGAGTCGAACATTGACCAATGCCTCAGCAGTCCGTTACGGGACCGGAGACAG ACTAGTGACCGACGAAATCGCTCCAAGGAGTGTCTACGGCACAGCCACGGAGAACACTAATTCGTATTTAAATAATAACAACAACGTCAGCTGGGAGTTT GACGTCGATGCCGGATACCAGTACTTTATTCGGTTCCACTTCTGCGACATAAGGTCGAACGACGGCTCGAATTCGAACCCTGACACAAGACGGCTCGTGT TCGATGTCTTGATCAATTCGGTGGTGGCTATCAAGGGGTATGACATCGGTTCGGTTACAAACGGTGTGGCGGGTGGTGCGGATTTTCGAGACTTGGTTAC GCCGGTAATATCGAACCGGACGCTTCGGGTGAGTATCGGTCCGAGTAATAACTCTTCTAGTGGCTATTGGAGTAGTGATGCGTTGCTGAATGGGGTTGAG ATCATGAAGATGAACAACTCATGGGGTAGTCTAAGTGGGTCTACTGCTGTGGGTCCTGACTACAATAATAATGGAGGTGCTGGTTCGGGGAAGAGGTTTG GTCCGGTCGGGGCGGTCCTAGCTGGAGTAATCAGCATTTTGGTTGCTTTGCTGCTGCTTGAGTAA
AA sequence Show only first row Show all	>Lus10038487 pacid=23158181 polypeptide=Lus10038487 locus=Lus10038487.g ID=Lus10038487.BGIv1.0 annot-version=v1.0 MVLVWISLLSFLILMPRYSECFVPTDNYLINCGSETDTPVDNRVFLADKSDSTFLSTPNHITANYTTNCTQQLTSEDSILYQTARIFDRKSTYTFPIKQQ GRHFVRLYFHPFVYSNYNMFQASFDVSTANQSLLSNFSVNGTFTTTLVLKEFSLNLASSSSLAITFAPSPNSFAYVNALEVVSVPDYLIKEGTATSYGTP DQTAEFQGMTSQSLETSYRVNMGGSMLNYSNDTLWRTWVTDRAFQINPSSSRTLTNASAVRYGTGDRLVTDEIAPRSVYGTATENTNSYLNNNNNVSWEF DVDAGYQYFIRFHFCDIRSNDGSNSNPDTRRLVFDVLINSVVAIKGYDIGSVTNGVAGGADFRDLVTPVISNRTLRVSIGPSNNSSSGYWSSDALLNGVE IMKMNNSWGSLSGSTAVGPDYNNNGGAGSGKRFGPVGAVLAGVISILVALLLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59700			Protein kinase superfamily pro...		Lus10038487 [exp]	0	1

Compare expression of checked genes

Lus10038487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.