Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46330 674 / 0 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 369 / 2e-111 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G48940 369 / 3e-111 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 358 / 1e-108 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G63930 357 / 4e-107 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 357 / 5e-107 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 352 / 5e-105 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 348 / 5e-104 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 342 / 3e-101 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 339 / 5e-101 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023323 [exp] 1404 / 0 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036251 [exp] 360 / 3e-107 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023681 [exp] 351 / 2e-106 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011756 [exp] 348 / 1e-103 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10008712 [exp] 346 / 1e-103 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 346 / 3e-103 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10032954 [exp] 345 / 2e-102 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037840 [exp] 336 / 8e-100 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 331 / 5e-98 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065400 [exp] 853 / 0 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G020900 [exp] 364 / 3e-110 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G025500 [exp] 365 / 4e-110 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G051300 [exp] 365 / 6e-110 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 357 / 6e-107 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 355 / 1e-106 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G030800 [exp] 349 / 6e-105 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G235100 [exp] 348 / 7e-104 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 350 / 1e-103 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G009300 [exp] 348 / 1e-103 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10038488 pacid=23158299 polypeptide=Lus10038488 locus=Lus10038488.g ID=Lus10038488.BGIv1.0 annot-version=v1.0 ATGGAGCTCCAAGGCCAGATATCTCCTTCTCTAGCCAACATCACATCCCTCCAGGTTCTTGACTTATCTTCAAACTCACTCACTGGCTCAATCCCTCCCC AGTTAGGATTCTGCTCACAACTCACCAACATCACTTTCTTCAACAACTCCCTAACCGGTCATATTCCAACCGAATTCGGTCACTTAACAAACCTCCTTTC ATTAGATGTTGGTGGTAACTATCTCAACGGAACCATTCCTGACACCATTTTCAATAATTTAACCACTCTGTCAGATTTCAATGCGTTCTTCAACGACCTC ACCGGTTCCATCTCCGACAAAATAAGTTACCTATACTTGTTGCTGTTTGAGAACTCGTTTTCGGGTCATATTCCTTCCGAGCTTGGTAGGTGTACTCGTC TAGTCAATCTCGAACTGTACTCCAACAACTTCACCGGACCGATTCCTCACGAGTTGGGGAATCTGACCCGGTTGGAGACGTTGAGAGTGTACAAAAACCG GCTCAACAGCTCAATCCCACTTTCCTTGACCAGATTAGAGTCGCTGACCAGGTTAGGGTTCTCTGAGAATGAGTTGACCGGTTCGATTCCATCAAAGATT GGATCTTTACAGTCATTAGTGGTACTAACACTACATTCCAACAATTTTTCTGGTGGGATTCCTACTTCAATCACAAATATTTCATCCTTAGCCTACTTTT CCATAGGGTTCAATTCCTTTACTGGTGAGCTGCCTGCAAATATAGGATCTTTGTACAACTTGCAGAATCTCAGTGCCAATAACAACTTTCTTGAAGGATC TATTCCATCTCAGATCACAAACTGTACCAAACTGTTCACCATAGATCTATCAATTAGTAACATGGTTGGTGAGATTCCTATGGGGATAGGGAAATTGGAG AATCTGACTAGGCTGTCTCTTGGGAGGAATCAGATGTCAGGGGAAATACCTGATGAGCTTTATGACTGTTTAAGCCTTGAAATCTTGGCTGCGGGTGAGA ATAATTTCACTGGATTTATAAATCCAGGTATTGGCAAACTGTCAAAGCTCAAGACTTTACGACTTGGGTTCAATTCTCTTGAAGGGTCCATACCACCAGA GATTGAGAACTTGAGTAAAGTTGTTACCTTGATGCTTTCTGGTAACCGGTTCGCTGGAGAAATCCCACCCGAGTTTTCGAAACTTTCAAATCTGCAAGGG CTTGCCTTGCATGGAAATGCTCTACAAGGCAGAATATCAGACAGCTTGTTTGAGCTAAAAAGCTTAACAGTTCTCCTGTTAGGGAACAACAAGCTGACAG GGCAGATTCCGGATTCCATCTCGAATCTCTCCATGCTTTCGAATCTGGATCTCCACGGAAACTCACTCAACGGTTCCATTCCGGCCAGCATGAAGAGTTT GAACAAGCTGACATCGATCGACCTCTCTTGCAACAATCTGTCAGGACCCATTCCTGGATCTGTAATCTCCGGGATGAAAAGTCTACAGATTGTTCTCAAC TTCTCGTATAACAATTTTGATGGTTCCATTCCAAACGAGCTTGGTACACTGGATTCCATCCAGGCCATTGACTTCTCTAACAACGATATTTCTGGAAACA TCCCTGACAGTATTAAGAGATGCGCGAATCTTTTCTCGCTCGATCTGTCAGGAAACAAGATATCCGGTCCGATTGCTGACATGAGTTGTCTCACTACTCT AACAAGCTTGAACCTTTCCAGAAATGAGCTCAACGGGCGAGTCCCCCAGACCGGAGTGTTCAGAGACATAGAGGAATCTAACTTGGTAGGGAATCTTGCT CTCTGCGGAATCAAATTTGTTGGATCCTGCAGCAGTAAGAAAATAAGTCATCGACACAAGTTTCAGAAGAAGACCATATGGATCCTCTCAGCACTCGAAG CAGTTTTCCTGCTCCTAGTACTTTCAGTTCTTGTCTCAGCGTTGATAAAACATGTCAGGAGGAAACAGAAGAAGAACGAAACAATCGTGTCGGAAGAAGG GTCCGGTTTTGGGCTAGAGAGGTTTGAAAGGAAGGAACTGGAGAAGGCTACTGATTTCTTCAGTGAAGAGAACAAGATCGGTTCAAGCAGTTTGAGCACG ATGTATAAAGGCCGGCTCGAAGATGGACGGGTGATAGCTGTGAAGAAACTAAACTTGGAGAAGTTCTTGTCAGCGAAGGAATCTGATAAGTGTTTCTATA GAGAAGCTAAGACTTTGAGCCAGCTGAAACATAGGAGTTTGGTCAGAGTGGTTGGATATGCTTGGGAGAGTGGGAAGCTTAAGGCTTTGGTTCTGGAGTA CATGGAGAATGGGAATCTGGATAGTGTTATACATGATTCGTCGCAGGTTGACCAGTCTAGTAGGTGGACAATACCAGAGAGAATCAAAGTCTGCATCTCG ATCGCAAGCGGACTGGAATATCTCCATACAGCTCGAATCCTGGGCGTCCATCTCCATGACCAAAACAACAATCCATCATCACCGTCATCAGCATTTGAAG GCACCATAGGCTACATGGCGCCAAATCTTTCCCAGCTGGTTCAGAAGGCAGTTTGTGTTGACATTGATGATGATGGTGATGAGATTTTGGACGGTGAGAT TAGTGGAGAGGCATCAACCAAGGTGGTGGAACAAGAGAAAGTTGAAAAGGTGCTGAGAATTGCCTTGTCTTGTGCTAGACCGAACCCAGAGGATCGTCCC AGCTTACAACTCTGTATTGGCTGCCTTGGAGAAGCTCAGAGATGCATAAAGTTAATTCTTCTAATTCGAACTAAGTGA
AA sequence Show only first row Show all	>Lus10038488 pacid=23158299 polypeptide=Lus10038488 locus=Lus10038488.g ID=Lus10038488.BGIv1.0 annot-version=v1.0 MELQGQISPSLANITSLQVLDLSSNSLTGSIPPQLGFCSQLTNITFFNNSLTGHIPTEFGHLTNLLSLDVGGNYLNGTIPDTIFNNLTTLSDFNAFFNDL TGSISDKISYLYLLLFENSFSGHIPSELGRCTRLVNLELYSNNFTGPIPHELGNLTRLETLRVYKNRLNSSIPLSLTRLESLTRLGFSENELTGSIPSKI GSLQSLVVLTLHSNNFSGGIPTSITNISSLAYFSIGFNSFTGELPANIGSLYNLQNLSANNNFLEGSIPSQITNCTKLFTIDLSISNMVGEIPMGIGKLE NLTRLSLGRNQMSGEIPDELYDCLSLEILAAGENNFTGFINPGIGKLSKLKTLRLGFNSLEGSIPPEIENLSKVVTLMLSGNRFAGEIPPEFSKLSNLQG LALHGNALQGRISDSLFELKSLTVLLLGNNKLTGQIPDSISNLSMLSNLDLHGNSLNGSIPASMKSLNKLTSIDLSCNNLSGPIPGSVISGMKSLQIVLN FSYNNFDGSIPNELGTLDSIQAIDFSNNDISGNIPDSIKRCANLFSLDLSGNKISGPIADMSCLTTLTSLNLSRNELNGRVPQTGVFRDIEESNLVGNLA LCGIKFVGSCSSKKISHRHKFQKKTIWILSALEAVFLLLVLSVLVSALIKHVRRKQKKNETIVSEEGSGFGLERFERKELEKATDFFSEENKIGSSSLST MYKGRLEDGRVIAVKKLNLEKFLSAKESDKCFYREAKTLSQLKHRSLVRVVGYAWESGKLKALVLEYMENGNLDSVIHDSSQVDQSSRWTIPERIKVCIS IASGLEYLHTARILGVHLHDQNNNPSSPSSAFEGTIGYMAPNLSQLVQKAVCVDIDDDGDEILDGEISGEASTKVVEQEKVEKVLRIALSCARPNPEDRP SLQLCIGCLGEAQRCIKLILLIRTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10038488 [exp]	0	1
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	6.3	0.8409
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	6.5	0.8347
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	7.7	0.7714
AT1G10350			DNAJ heat shock family protein...		Lus10030803 [exp]	11.7	0.8174
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	12.4	0.7992
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	12.8	0.8240
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	19.6	0.8080
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	31.6	0.7832
AT1G12330			unknown protein		Lus10028918 [exp]	38.2	0.7527
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	41.1	0.8071

Compare expression of checked genes

Lus10038488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.