Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18240 1210 / 0 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 379 / 1e-114 ATSS3 starch synthase 3 (.1.2) AT5G65685 243 / 7e-71 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G01180 202 / 5e-54 ATSS2 starch synthase 2 (.1) AT5G24300 199 / 1e-53 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 196 / 1e-52 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023319 [exp] 1850 / 0 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 1389 / 0 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 1385 / 0 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10006780 [exp] 371 / 4e-111 AT1G11720 1529 / 0.0 starch synthase 3 (.1.2) Lus10020044 [exp] 343 / 4e-101 AT1G11720 1508 / 0.0 starch synthase 3 (.1.2) Lus10018116 [exp] 219 / 4e-60 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022398 [exp] 218 / 5e-60 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 205 / 6e-55 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 190 / 4e-50 AT3G01180 928 / 0.0 starch synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351800 [exp] 1272 / 0 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 421 / 3e-135 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 379 / 9e-114 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 310 / 2e-92 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.015G012400 [exp] 213 / 2e-58 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.017G084100 [exp] 203 / 2e-54 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.001G449500 [exp] 179 / 3e-47 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G152200 [exp] 174 / 2e-45 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G079450 [exp] 82 / 4e-19 AT4G18240 77 / 1e-18 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.006G097600 [exp] 45 / 0.0003 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10038491 pacid=23158193 polypeptide=Lus10038491 locus=Lus10038491.g ID=Lus10038491.BGIv1.0 annot-version=v1.0 ATGGCGACGAAGCCATCATCGTCTCGCTTTATCAACCAAAGTCTTGCAGGTTTTAGCTACGGCGGCAATCACAGAAATGTTCGCTTCTCACCTCCTCAGC ATCATCAGCTTCTGCTCCCTGCGATTCGACACCGCCATTTCAGTTTCCGGTACCAGCTCAAGAAACAGCAACTGAAGAAAGCTTCCACTGAATCGACGGC GGAATCTTACGAGGCCGCTGCTCCACACAAAGATGTTCCTAATCTTGATGCCGCTGCTAGCATCGATGAGGAGGACGCCAGTGGAAAAGATTCGCAGAGC CGGATTGAGACTGAGGAATGCGTCGACGGACAAGAGGTGGAGACTATAGCAGATGTCGAGCACATCCACGATGACGATTCTGAGCGTCGAGAAACACCTA ATGAATCTGAAGAAGCCGAATCTCTGGCTTTGAATCTAAACGTAGACGGTGAAAAGAGACTTTCAAGTGTTCAGCTAGGGGATCTGATTGGCATGATAAG GAAAGCAGAGAAAAGAATCACTGCTAGGATTCGTGCTGTTGAGGATCTTGATAAAATTCTCTCGGAGAAGGAATCACTGCAAGGAGAAATTAATCTTCTG GAGACAAGATTGGCTGAAACTAATGCAAAGTTAAGAGTTGCTTCCCAGGAGAAGGCACATCTGCAACTCCTAGAGAATCAGCTTGAAGAACTAAGGAATG AGCTGACTCACAGGAGTCCAGGTCCTGCAGTTGGGGATGTGCTTCATCATCGTGAGAACCAACCAAGAAACAATGAAGCCTCTCTGGTTCCATATGCTGA TACTACTTCTCTCGCTGAGGAGCTCAACTCTTTGAGAACAGAGAATATGTTTCTGAAGCAGGATCTTGAACTACTTAAAGCAGAGCTTAATGCTATCAGA AACACAGATGGGAGAGTAATAACACTCGAGAAGGACCGGTCGACAATTAAGTCATCCTTAAGGGACTTGGAGTCCTTAGTGTCAACTTCTCAGGCAGATG TTTCTAAATTGTCTAGTCTAAAAGTTAAACATAAGGACTTGTGGTCGAAAGTGGAGAGTCAGCAAAGCCTTCTTGATAAGGTAACCAAGCAGGCAGATCG AGCTCTCATTGTGTTGCAACAAAACCAAGAGTTGCGGGAAAAGGTGCATAGGTTGGAAGAATCCTTAGAAGAAGCTAACATCTATAAGCTGTCATCCGAA AAACTGCAAGACTACAATGAATTAATGCAGCGAAAAATAAAGCTTCTGGAAGAACATCTCCAAAGGTCTGATGATGAGATACATTCTTATGTACAACTGT ATCATGACTCTATACAGGAATTTCAGGATACACTGAGCAACCTGATAGAAGAAAGCAAAGAAAGAGCTTTAGACGGACCTGTAGATGATATGCCTTCGGA CTTTTGGAGTCGTTTACTGCTTAAAATTGATGGCTGGCTACTGGAGAAAAAAATGTCTACAGATGATGCAAAGCTTTTGAGAGACCTGGTATGGAAGAGA GATAGGAAAATTTGTGATGCATACATGCAGTGTGAGGAAAAGGATGACCATGATTCCATATCAACTTTCCGAAAGCTCACTTCACAACCTGAAAGTTTAG GGTTGCATGTCATTCACATAGCGGCAGAGATGGCTCCAGTTGCTAAGGTTGGTGGCTTAGGAGATGTTGTCAGTGGCCTTGGTAAAGCACTACAAAAAAG AGGACACCTCGTGGAGATTATTCTGCCCAAATATGACTGCATGCAATATGATCGAATATATGACTTGAAGGCCTTAGATCTGGTAGTAGAGTCATATTTT GAAGGAAGACTGTACAAAAACAAGATCTGGATTGGCGTTGTTGAAGGTCTTCCTGTATACTTTATTGAGCCGCTTCACCCTGGAAAGTTCTTTTGGCGAG GAGAGTTTTATGGGGAACATGATGATTTTAAACGCTTCTCATTTTTCAGCCGGGCAGCTCTCGAGCTGCTTCATCAATCAGGCAAAAAACCCGACATTAT TCATTGTCACGATTGGCAGACTGCTTTCATAGCCCCACTTTACTGGGAAATATATGCCCCAAAAGGATTGAATTCAGCTAGAATATGCTTTACGTGCCAC AACTTTGAGTACCAAGGAGCTGCACCTGCTTCGGAACTGGCTTCTTGCGGTCTTGATGTCCAACATCTTAATAGGCCAGATAGAATGCAGGACAATTCTG CACATGATAGGGTTAATCCTGTAAAGGGTGCAGTTGTGTTCTCAAACATCGTGACAACTGTCTCACCTACCTATGCTCAAGAGGTTCTCACGGCAGTGGG TGGTAAAGGCCTCCATTCAACTCTTAATTCTCACTCCAGGAAGTTTATAGGAATTCTTAATGGGATAGATCTTGATGCTTGGAATCCTTCAACTGATGGT TTCCTCAGTACCCAGTACAGTGCTAATGATCTCGAGGGAAAATCGTATAACAAAACAGCTCTAAGAAGAGACCTTGGTCTTTCCACTGCCAATGTCAGGC AGCCATTGGTAGGGTGCATAACGAGATTAGTGCCACAGAAAGGTGTTCATCTCATCAGACATGCAATTTACCGGACATTAGAGCTTGGGGGACAATTCGT GCTACTTGGTTCCAGCCCAGTTGCACAGATTCAGCAAGAATTCGAGGGGATTGCAAACCAGTTCCGGAACAATGGAAATGTTCGACTTATACTGAAGTAT GACGAAGCCCTTTCCCATTCTATTTATGCAGCATCTGACATGTTCATCATCCCATCCGTCTTTGAGCCATGTGGACTGACACAGATGATTGCCATGCGTT ATGGTTCAGTACCGATTGTGAGGAAGACTGGTGGTCTGAATGACAGCGTCTTTGATGTCGATGATGATACGGTACCTCTCCAGTTTCGCAATGGATTTAC CTTCTTGAACCCAGATGAAGAGGCGTTCAGCAGCGTTCTGGAGCGAGCTTTCAAACACTATAAGAATGACACGGAAGGTTGGCAAGAACTTGTCCGACGA ATCATGAAACTGGACTTTAGCTGGGGAACTTCAGCCGCTCACTATGAGGAGCTTTACTCCAAGTCCGTGGCCAGGGCAAGGGCCGCTAACAGAGCGTAA
AA sequence Show only first row Show all	>Lus10038491 pacid=23158193 polypeptide=Lus10038491 locus=Lus10038491.g ID=Lus10038491.BGIv1.0 annot-version=v1.0 MATKPSSSRFINQSLAGFSYGGNHRNVRFSPPQHHQLLLPAIRHRHFSFRYQLKKQQLKKASTESTAESYEAAAPHKDVPNLDAAASIDEEDASGKDSQS RIETEECVDGQEVETIADVEHIHDDDSERRETPNESEEAESLALNLNVDGEKRLSSVQLGDLIGMIRKAEKRITARIRAVEDLDKILSEKESLQGEINLL ETRLAETNAKLRVASQEKAHLQLLENQLEELRNELTHRSPGPAVGDVLHHRENQPRNNEASLVPYADTTSLAEELNSLRTENMFLKQDLELLKAELNAIR NTDGRVITLEKDRSTIKSSLRDLESLVSTSQADVSKLSSLKVKHKDLWSKVESQQSLLDKVTKQADRALIVLQQNQELREKVHRLEESLEEANIYKLSSE KLQDYNELMQRKIKLLEEHLQRSDDEIHSYVQLYHDSIQEFQDTLSNLIEESKERALDGPVDDMPSDFWSRLLLKIDGWLLEKKMSTDDAKLLRDLVWKR DRKICDAYMQCEEKDDHDSISTFRKLTSQPESLGLHVIHIAAEMAPVAKVGGLGDVVSGLGKALQKRGHLVEIILPKYDCMQYDRIYDLKALDLVVESYF EGRLYKNKIWIGVVEGLPVYFIEPLHPGKFFWRGEFYGEHDDFKRFSFFSRAALELLHQSGKKPDIIHCHDWQTAFIAPLYWEIYAPKGLNSARICFTCH NFEYQGAAPASELASCGLDVQHLNRPDRMQDNSAHDRVNPVKGAVVFSNIVTTVSPTYAQEVLTAVGGKGLHSTLNSHSRKFIGILNGIDLDAWNPSTDG FLSTQYSANDLEGKSYNKTALRRDLGLSTANVRQPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAQIQQEFEGIANQFRNNGNVRLILKY DEALSHSIYAASDMFIIPSVFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDVDDDTVPLQFRNGFTFLNPDEEAFSSVLERAFKHYKNDTEGWQELVRR IMKLDFSWGTSAAHYEELYSKSVARARAANRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	0	1
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	1.4	0.9073
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10008452 [exp]	4.9	0.8919
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	5.9	0.8893
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	7.3	0.8880
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10019894 [exp]	7.7	0.8584
AT4G10920		KELP	transcriptional coactivator p1...		Lus10030245 [exp]	8.0	0.8653
AT1G73970			unknown protein		Lus10000648 [exp]	9.2	0.8869
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	10.7	0.8606
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	12.8	0.8896
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	15.0	0.8922

Compare expression of checked genes

Lus10038491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.