Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18270 368 / 4e-123 ATTRANS11 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023316 [exp] 720 / 0 AT4G18270 389 / 7e-133 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G080600 [exp] 469 / 5e-162 AT4G18270 414 / 2e-140 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00953 [flax] [poplar] Glycos_transf_4 Glycosyl transferase family 4
Representative CDS sequence Show only first row Show all	>Lus10038493 pacid=23158411 polypeptide=Lus10038493 locus=Lus10038493.g ID=Lus10038493.BGIv1.0 annot-version=v1.0 ATGCGATCTCTGAATTCCCACCGGTCATCCATAGCTCCGCCTGCTCGCTTCCGGAGGCGAACTTGCTATTCTCTTGACGCAGCAGCATCGATCCCCTTCT ACTCCTGCTCATCTCGCACTCCCAAGGATTCCTTCTTTGTTTCCCCAATTGATGATTGGGCTGATCATGACATCCTTCCTATTGAGTACGTTCTCTCATC CAGCGATGGTGATGATAGCGACGGCGAATTTCTTTTGAGTCCTTTAACTGACATGGATTTACCACACACTGCGAAGGTCTCCACGAACGATGCTCTTACA GTAACAGCTCACCGGCTGGGGTTGATTGGGAAGGGCCATAAAAGACATAGGATCAAGTATGGGATTTGGAACAATTTCGGGCTGATTATCTTTTTGACGT CGCTTATTTTGTTCGTTGATTGGTGGGCGTGGAAGATTGTTCGAATTCCCTTACCGCCATTTCACCTGTCGCGGCCTTTTTTCCTATCGGCAGCTTTGGT AGCCTTTGCAGGATACGTTTGTGTCCCCTTGCTCGATGTTTTGATGGTTCATGATTCTGTGAGGAGGATAGGATATTTTATGTATTCCAGGAAGAGGCCA ACGCCTACCATGGGTGGCTTGTTCATGGTACCTATTGGTGTTGCTGTTTCCATCTTCTTTGCTGGTTTTACCTCTGTTGAAGTTTCTTCAGCAGCATTAG CCACTGTTGTATTTGCTGCAATCGGTTTACTAGATGACATTGTGAGGATTATCAAGAAACATCACTGTGGCTTGTCCATGTGGACAAAGTGTATTTTGGA GGTGGCTTCAGGAATTGGGTTTGCAGTTTGGTTAGACACCGCCAAGATTGCGTCGCCTTACAGCATGAAAATGTTGGTTCCGCTACCTGCACCGATGGGC CTTGTTTTCATGGGCAAGTTTTATTGGTTGGTGACGTCTCTATGTTTTGTCTCCATGGGGCAGGGAATCGACCTGACAGATGGACCGGATGGGCTAGCTG CTGGAATTGCTGCATTGGCTTTCATAGCAATGTCAGTTGCAGTGCTACCAATATGTTCCGAACTCGGCATATTTGGAGCATCAATGGCAGGTGCCTGTGT CGGTTTTCTGTTACACAACCGGTACAAGGCATCAGTCCTGCTGGGAAACACAGGATCCTTGGCCATGGGGGGAGCATTAGCTGCAATGGCTGCTTGCACT GGGATGTTCTTTCCATTGTTTATATCATCGGGAATCATTGTTTTGGAAGCATTGTCGGTCCTAATGCAGGTGGTAAACTTGAAGGAAAGGAAAAGCTTGA AGGCGGGGTTCCGACGGTACCTGACGTGCATCGCACCTCTACACCGGCACCTGCAGTTGTGGGGAGTGAAGGAACCGATCATCGTTGCAGGTGCATATGT TATATCGAGCTTTCTGGCTTTGTCAGGAGGATATGTGGCTCTCATCTCAGCCTAA
AA sequence Show only first row Show all	>Lus10038493 pacid=23158411 polypeptide=Lus10038493 locus=Lus10038493.g ID=Lus10038493.BGIv1.0 annot-version=v1.0 MRSLNSHRSSIAPPARFRRRTCYSLDAAASIPFYSCSSRTPKDSFFVSPIDDWADHDILPIEYVLSSSDGDDSDGEFLLSPLTDMDLPHTAKVSTNDALT VTAHRLGLIGKGHKRHRIKYGIWNNFGLIIFLTSLILFVDWWAWKIVRIPLPPFHLSRPFFLSAALVAFAGYVCVPLLDVLMVHDSVRRIGYFMYSRKRP TPTMGGLFMVPIGVAVSIFFAGFTSVEVSSAALATVVFAAIGLLDDIVRIIKKHHCGLSMWTKCILEVASGIGFAVWLDTAKIASPYSMKMLVPLPAPMG LVFMGKFYWLVTSLCFVSMGQGIDLTDGPDGLAAGIAALAFIAMSVAVLPICSELGIFGASMAGACVGFLLHNRYKASVLLGNTGSLAMGGALAAMAACT GMFFPLFISSGIIVLEALSVLMQVVNLKERKSLKAGFRRYLTCIAPLHRHLQLWGVKEPIIVAGAYVISSFLALSGGYVALISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10038493 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10008139 [exp]	2.6	0.7360
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011085 [exp]	12.3	0.6840
AT2G33490			hydroxyproline-rich glycoprote...		Lus10001808 [exp]	13.8	0.6712
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	29.9	0.6726
AT1G03370			C2 calcium/lipid-binding and G...		Lus10003910 [exp]	47.3	0.6512
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	76.2	0.6481
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	97.0	0.6258
AT4G24480			Protein kinase superfamily pro...		Lus10028168 [exp]	123.5	0.6185
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	158.4	0.5941
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	165.2	0.6002

Compare expression of checked genes

Lus10038493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.