Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34510 603 / 0 Protein of unknown function, DUF642 (.1) AT1G29980 592 / 0 Protein of unknown function, DUF642 (.1.2) AT4G32460 359 / 1e-121 Protein of unknown function, DUF642 (.1.2) AT5G11420 345 / 5e-116 Protein of unknown function, DUF642 (.1) AT5G25460 343 / 3e-115 Protein of unknown function, DUF642 (.1) AT1G80240 336 / 2e-112 Protein of unknown function, DUF642 (.1) AT3G08030 315 / 4e-104 Protein of unknown function, DUF642 (.1.2) AT2G41810 313 / 1e-103 Protein of unknown function, DUF642 (.1) AT2G41800 308 / 9e-102 Protein of unknown function, DUF642 (.1) AT5G14150 140 / 4e-37 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023314 [exp] 738 / 0 AT2G34510 608 / 0.0 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 357 / 2e-120 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 356 / 4e-120 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 353 / 4e-119 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 338 / 4e-113 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10035910 [exp] 339 / 6e-113 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10039602 [exp] 337 / 1e-112 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10025753 [exp] 336 / 2e-112 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10029502 [exp] 317 / 1e-104 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G087500 [exp] 620 / 0 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.006G250100 [exp] 357 / 1e-120 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 349 / 9e-117 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 335 / 1e-111 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 334 / 1e-111 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 330 / 3e-110 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 326 / 3e-108 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 323 / 2e-107 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 322 / 8e-107 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.016G056100 [exp] 321 / 1e-106 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10038495 pacid=23158491 polypeptide=Lus10038495 locus=Lus10038495.g ID=Lus10038495.BGIv1.0 annot-version=v1.0 ATGAAAGGAGACAGTGGCAGGCAAAATGCTGGAGTGAGCCTGGAATCTTGCGATATAAAGTACGCTCCTTTACCCTTCTCCTTAGTCCTTCCCTGTCCAG TCTACATAAACCCAACAACACCCAAAGCCAGGGAGAAAGATCGAAATAGAGGAAAGAGTGAAGGAACTTGGAGAGGAGGCCGGATCAAGATGGTGCCGCC GCCGCCGACAAGAAGAAGTAAATGGCTGCCTCTTTGCGCCCTCTTTCTGTTCGCCCTTTTGGCCTCTGCAATCCTCGGCGATGACGGACTGGTGACGAAC GGAGATTTCGAAACCCCACCGTCAAACGGCTTCCCTACCGACGAATCCATCCTGGAGGGCCCCACGGAGATCCCCAGCTGGAAATCAAACGGCACAGTGG AGCTGGTCTCGTCGCGACAAAAACAAGGTGGGATGATCCTCATCGTTCCTCAAGGAACACACGCCGTCCGATTGGGGAACGACGCCGAGATCAGCCAGGA GCTGACGGTGGAGAAAGGCTCCGTCTACTCCGTCACGTTTAGCGCCGCTCGCACGTGCGCGCAGCTGGAGTCTCTCAACGTCTCCGTTCCGCCTACTGCT TCGCAGACCATAGACCTTCAGACGCTGTATAATGTTCAAGGGTGGGACCCATACGCGTGGGCTTTCCAGGCGGATGACGACAAAATAACGCTTGTCTTTA GGAATCCCGGCATGGAAGATGACCCCACCTGTGGGCCCATCATCGACGACATCGCCATCAAAAAGCTCTTCTCCCCTGATCGCCCCAAAGAGAATGCGGT GGTGAACGGCGATCTCGAGGAAGGACCATGGATGTTCAGGAATATTTCACTCGGGGTCTTACTCCCAACCAACCTAGACGATCAGACATCGTCTCTACCC GGTTGGATCGTGGAATCGAATCGGGCGGTTCGGTACATCGACTCCAACCATTTCTCGGTCCCGGAAGGGAAGAGAGCGGTCGAGCTTCTATCGGGGAAAG AAGGGATCATTTCGCAGATGGTGGAGACGAAGCCGAACAAGGATTACAAGCTGTCGTTTGCTTTGGGGCAAGCGGGGGATAAATGCAAGGATCCGCTGGC GGTGATGGCCTTTGCGGGAGATCAGGCGCAGAACATCCACTACACTCCCGATTCGAACTCTAGTTTTCAGACTGCTGCTCTGAACTTCACTGCGAAGGCT GAGAGGACCAGGATTGCGTTCTACAGTATTTATTACAATACGAGGACCGACGACATGAGCTCCCTGTGCGGGCCGGTGATTGATGACGTCCGCGTTTGGT TTTCTGGGGCTGGGAGGATTCGGTTTGGGTTCGAGCCGGTCAGGATGATTCTACTGGTTGGGTTTTGGGGGTTTGTGGTGGTGTTCGGTTTGGTTTAG
AA sequence Show only first row Show all	>Lus10038495 pacid=23158491 polypeptide=Lus10038495 locus=Lus10038495.g ID=Lus10038495.BGIv1.0 annot-version=v1.0 MKGDSGRQNAGVSLESCDIKYAPLPFSLVLPCPVYINPTTPKAREKDRNRGKSEGTWRGGRIKMVPPPPTRRSKWLPLCALFLFALLASAILGDDGLVTN GDFETPPSNGFPTDESILEGPTEIPSWKSNGTVELVSSRQKQGGMILIVPQGTHAVRLGNDAEISQELTVEKGSVYSVTFSAARTCAQLESLNVSVPPTA SQTIDLQTLYNVQGWDPYAWAFQADDDKITLVFRNPGMEDDPTCGPIIDDIAIKKLFSPDRPKENAVVNGDLEEGPWMFRNISLGVLLPTNLDDQTSSLP GWIVESNRAVRYIDSNHFSVPEGKRAVELLSGKEGIISQMVETKPNKDYKLSFALGQAGDKCKDPLAVMAFAGDQAQNIHYTPDSNSSFQTAALNFTAKA ERTRIAFYSIYYNTRTDDMSSLCGPVIDDVRVWFSGAGRIRFGFEPVRMILLVGFWGFVVVFGLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	0	1
AT2G34510			Protein of unknown function, D...		Lus10023314 [exp]	1.0	0.8838
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	2.4	0.8752
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	2.4	0.8766
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	4.6	0.8613
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	6.0	0.8618
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	6.0	0.8644
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	7.1	0.8536
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	7.4	0.8623
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	8.5	0.8603
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	10.0	0.8135

Compare expression of checked genes

Lus10038495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.