Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46220 520 / 0 Protein of unknown function (DUF616) (.1) AT1G28240 189 / 1e-53 Protein of unknown function (DUF616) (.1) AT4G38500 182 / 9e-52 Protein of unknown function (DUF616) (.1) AT1G53040 176 / 4e-49 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT2G02910 154 / 2e-41 Protein of unknown function (DUF616) (.1) AT4G09630 144 / 6e-37 Protein of unknown function (DUF616) (.1) AT1G34550 143 / 1e-36 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT5G42660 135 / 1e-34 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023312 [exp] 811 / 0 AT5G46220 552 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 192 / 9e-55 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 175 / 4e-49 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 176 / 1e-48 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 171 / 1e-47 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 160 / 1e-43 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 160 / 3e-43 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 159 / 2e-42 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 157 / 1e-41 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107800 [exp] 598 / 0 AT5G46220 531 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 189 / 6e-54 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G053000 [exp] 189 / 1e-53 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 187 / 4e-53 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.004G044100 [exp] 187 / 1e-52 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 172 / 7e-48 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 166 / 1e-45 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 156 / 2e-42 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 149 / 1e-38 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 144 / 4e-37 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10038497 pacid=23158285 polypeptide=Lus10038497 locus=Lus10038497.g ID=Lus10038497.BGIv1.0 annot-version=v1.0 ATGGCGAAACCAAAATCACCCAAATCTCCTCCGCCGTTCTTCCCATCAAAGCTCCTCTGTTTCTCTCTGTTATACCTCCTCACATCATTCTCCTTAGCCT TCTACAACTCTCTATCATCCACCAAATGCCTCTTCCGCTCTCCCCCATTCGACCCGATCCAATCCCCTCTCTTCACGTACCCTTCTTCCTATGGCCAACA CAAGTACGCCCTCCCTACCCACCGCAATTCCTGCTCCTCCTCTCCGGTTCAATTCTCGGAGTACTGGGATGTGGTACGGGAGATCCAGAACCTGACGTTT GTGGAATCGTCAAGATTGAGGTATATGAAGGGAGAAAGACAGAGTTTTGGGGGGAATTTGAGTGTCCGTGAAAGGATTTCTTATTTTAACTATTCGGATG ATGGTGATGATCATACAGAGGTTCCTTGTGCGTTCTTCAAGGAGTTTCCTGTTAGCCCTTCTGACCGGATTGGGATGGACAGCTGCAACGGGTTAGTGGT GGTGTCGGCAGTATTCAACGACCATGACAAAATCCGACAGCCGAAGAGCCTAGGGTCCGAAACCCTAGACTCTGTTTGTTTCTTCATGTTCGTCGACGAG ACAACACTTTCCGGGTTAGAAAATCACGGGGTAGTAAGTTCAAGAGAGACGTCCATATTGTCGGTAGGTGTTTGGAGGATCGTAAATGTGGACACTACCG GATCGACATTGTACGAGAACCCGGCGATGAACGGAGTGGTACCGAAGTATTTGGTACACAGGCTGTTCCCTAACTCGAAATTCAGCATATGGGTTGATGC CAAGATGCGGCTGATGGTGGACCCGTTGCTGTTGATTCACGCGTTGGTTGTGGCTCGAGATGTTGATGTTGCGATTTCGAGGCATCCGTTTTTCGTCAAC ACGATGGAGGAAGCAATGGCTACGGCTAGGTGGAAGAAATGGTGGGATGTTGAAGGTTTGAGGGTTCAGATTGAGACCTATTGTGAGAATGGGTTGCAGC CATGGTCGCCCAAGAAGCTTCCTTATCCTTCAGATGTTCCAGACAGTGCTGTAATACTGAGGAAGCACGGGGTGAGGAGCGACTTGTTCTCATGTCTGAT GTTCAACGAACTCGAGGGGTTCAACCCGCGGGACCAGCTGGCGTTTGCGTACGTTCGAGATGGGATGGTGCCGAAGGTGAAGATGAACATGTTTGAGGTG GAGGTTTTGGAGCAGATTTCGTTGGAGTACAGACATGTGATTTTGAACAAGAAGAAGAAGAAGAAGAAGAAAGCTGCTGGTCCTGCTCAGGAGGGGACCA AAGCTGCAGGAAGATCAAAGTTCCATGATTTTGTAGTTAATAGTAGTTGTTGTAGTAAGTGTCAGAATCATTTGTTGAAAATGTGGGGTGATTCCCATAA TTGA
AA sequence Show only first row Show all	>Lus10038497 pacid=23158285 polypeptide=Lus10038497 locus=Lus10038497.g ID=Lus10038497.BGIv1.0 annot-version=v1.0 MAKPKSPKSPPPFFPSKLLCFSLLYLLTSFSLAFYNSLSSTKCLFRSPPFDPIQSPLFTYPSSYGQHKYALPTHRNSCSSSPVQFSEYWDVVREIQNLTF VESSRLRYMKGERQSFGGNLSVRERISYFNYSDDGDDHTEVPCAFFKEFPVSPSDRIGMDSCNGLVVVSAVFNDHDKIRQPKSLGSETLDSVCFFMFVDE TTLSGLENHGVVSSRETSILSVGVWRIVNVDTTGSTLYENPAMNGVVPKYLVHRLFPNSKFSIWVDAKMRLMVDPLLLIHALVVARDVDVAISRHPFFVN TMEEAMATARWKKWWDVEGLRVQIETYCENGLQPWSPKKLPYPSDVPDSAVILRKHGVRSDLFSCLMFNELEGFNPRDQLAFAYVRDGMVPKVKMNMFEV EVLEQISLEYRHVILNKKKKKKKKAAGPAQEGTKAAGRSKFHDFVVNSSCCSKCQNHLLKMWGDSHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46220			Protein of unknown function (D...		Lus10038497 [exp]	0	1
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10012523 [exp]	4.4	0.9448
					Lus10005454 [exp]	5.3	0.9168
AT1G27080		NRT1.6	nitrate transporter 1.6 (.1)		Lus10038615 [exp]	7.1	0.8974
					Lus10016571 [exp]	8.3	0.9426
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	10.9	0.9426
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10003348 [exp]	12.5	0.9376
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10020657 [exp]	17.1	0.8874
AT5G47530			Auxin-responsive family protei...		Lus10002274 [exp]	20.0	0.9135
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	21.4	0.9107
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	26.1	0.9246

Compare expression of checked genes

Lus10038497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.