Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30040 248 / 1e-82 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT1G78440 246 / 9e-82 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT2G34555 235 / 2e-77 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G47990 178 / 2e-55 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G02400 172 / 5e-53 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G80340 115 / 5e-31 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G15550 109 / 1e-28 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G80330 106 / 2e-27 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT5G07200 102 / 8e-26 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G17020 101 / 1e-25 ATSRG1, SRG1 senescence-related gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023311 [exp] 313 / 2e-108 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10025016 [exp] 177 / 7e-55 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 176 / 3e-54 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 175 / 6e-54 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 157 / 7e-48 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 158 / 2e-47 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10011476 [exp] 113 / 6e-30 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10027807 [exp] 104 / 4e-27 AT5G05600 330 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 105 / 1e-26 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065000 [exp] 272 / 4e-92 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.001G378400 [exp] 250 / 2e-83 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 249 / 2e-82 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.014G117300 [exp] 196 / 4e-62 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 188 / 5e-59 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.002G191900 [exp] 186 / 2e-58 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.010G149700 [exp] 184 / 2e-57 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.001G007100 [exp] 114 / 3e-30 AT1G55290 496 / 4e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G057400 [exp] 108 / 4e-28 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.015G002800 [exp] 107 / 9e-28 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10038498 pacid=23158367 polypeptide=Lus10038498 locus=Lus10038498.g ID=Lus10038498.BGIv1.0 annot-version=v1.0 ATGGAGATGCTGGAAGCGATGGCGGAAGGGGTTGGGATAGAGCCAAGTAATGCGCTCAGCCGGTTGGTTGATGACGAGGGTAGCGACTCGTGCCTTCGGT TGAACCATTACCCGCGCTGCCCAGAGGTTCAACCGTCCTTGTCGGGTGGTCTGACGAATCTGGTCGGATTCGGCGAACATACCGACCCGCAGATTGTCTC GGTTTTGAGATCCAACAACACCACCGGCCTCCAAATCTGCCTTAAAGACGGCGCGTGGGTTTCCGTGCCGCCGGATCAGTCTTCCTTCTTTGTCATCGTC GGCGATGCCCTCCAGGTGATGACTAACGGGAGGTTCAAGAGCGTAAAGCACAGGGTCATGACGGACCCCACGAAATCGAGGGTGTCGATGATTTATTTCG CGGGACCACCAATGAGCGAAAAGATTGTACCTTTGGAATCGATTATGGAAGCCGGAGAGGAAAGCAGGTACGCGGAGTTCACATGGTCGGAGTACAAACA ATCGGCTTACAAGTCGAGGCTCGCTGATTACAGGCTCGGCCATTTCGAGAAGAAGAAGATCAAGAACATCAACAAGAATGAAGAGTTTTGGTTGTAG
AA sequence Show only first row Show all	>Lus10038498 pacid=23158367 polypeptide=Lus10038498 locus=Lus10038498.g ID=Lus10038498.BGIv1.0 annot-version=v1.0 MEMLEAMAEGVGIEPSNALSRLVDDEGSDSCLRLNHYPRCPEVQPSLSGGLTNLVGFGEHTDPQIVSVLRSNNTTGLQICLKDGAWVSVPPDQSSFFVIV GDALQVMTNGRFKSVKHRVMTDPTKSRVSMIYFAGPPMSEKIVPLESIMEAGEESRYAEFTWSEYKQSAYKSRLADYRLGHFEKKKIKNINKNEEFWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Lus10038498 [exp]	0	1
AT1G51410			NAD(P)-binding Rossmann-fold s...		Lus10009955 [exp]	2.0	0.6872
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10012751 [exp]	30.3	0.6045
AT2G17220		Kin3	kinase 3, Protein kinase super...		Lus10023000 [exp]	32.0	0.6784
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	62.2	0.6616
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	83.7	0.6115
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	119.8	0.6232
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	234.4	0.5871

Compare expression of checked genes

Lus10038498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.