Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30070 281 / 6e-97 SGS domain-containing protein (.1.2) AT4G23570 42 / 0.0002 SGT1A phosphatase-related (.1.2.3) AT4G11260 40 / 0.001 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023310 [exp] 323 / 3e-108 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024680 [exp] 43 / 7e-05 AT4G11260 459 / 2e-162 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10027540 [exp] 41 / 0.0004 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10010669 [exp] 40 / 0.0005 AT3G03773 223 / 6e-76 HSP20-like chaperones superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G085100 [exp] 295 / 2e-102 AT1G30070 285 / 2e-98 SGS domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain CL0190 [flax] [poplar] PF05002 [flax] [poplar] SGS SGS domain CL0190 [flax] [poplar] PF09032 [flax] [poplar] Siah-Interact_N Siah interacting protein, N terminal
Representative CDS sequence Show only first row Show all	>Lus10038500 pacid=23158279 polypeptide=Lus10038500 locus=Lus10038500.g ID=Lus10038500.BGIv1.0 annot-version=v1.0 ATGGCGAGCGATTTAGCTCTGGATTTGGAGGAGCTCAGACAGCTTCAAGGTTTAGCCAAGAGGCCACGAGTCCTATCCCTCATCTCTTCGGAGATTCGCA ACTTGGAGCAGATGTGGAGAGATTCTGCTCCAACTCCAACACCAACTCCCGTTGCTACTGGAGCTAAGCCATCTACTCTTCCGACGTTATACTCCGCGCT TGGCTCGTTCAGCTATGATCAGGACAGTGAGAAACTCAAGATATATGTATCTTTGGAGGGGGTTGATGAAGAGAAAATCGAGGCAGAATTCAATCCAATG TCCTTCGACATCAAATTCCATGATGTTCAAGGAAAGAACTACAGATGTGCCATACCAAAACTGAACAAGGAGATAGTGCCCGAGAAGTGTAAGGTGTTGG TTAAGCCTAAAAGGGTCGTTATCACTCTGTTCAAAGCTTCAAAGGGTAATTGGTTAGACTTGCACTTCAAAGAAGACAAGCTGAAGCCGGATCTGGGGAA GAACAGTGATCCGATGGCTGGGATTATGGGATTGATGAAGAACATGTACGAGGAAGGAGATGAAGATATGAAACGTACCATTGCCAAAGCATGGATTGAT GCAGGATCTGGCAAACCAACTGCCGGGAGATAA
AA sequence Show only first row Show all	>Lus10038500 pacid=23158279 polypeptide=Lus10038500 locus=Lus10038500.g ID=Lus10038500.BGIv1.0 annot-version=v1.0 MASDLALDLEELRQLQGLAKRPRVLSLISSEIRNLEQMWRDSAPTPTPTPVATGAKPSTLPTLYSALGSFSYDQDSEKLKIYVSLEGVDEEKIEAEFNPM SFDIKFHDVQGKNYRCAIPKLNKEIVPEKCKVLVKPKRVVITLFKASKGNWLDLHFKEDKLKPDLGKNSDPMAGIMGLMKNMYEEGDEDMKRTIAKAWID AGSGKPTAGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	1.0	0.9653
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	1.7	0.9599
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	3.2	0.9611
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10026453 [exp]	4.5	0.9284
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004340 [exp]	5.7	0.9218
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10023786 [exp]	6.0	0.9324
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10025888 [exp]	6.8	0.9156
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	8.7	0.9467
AT5G35320			unknown protein		Lus10011963 [exp]	9.5	0.9253
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	9.5	0.9413

Compare expression of checked genes

Lus10038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.