Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46210 912 / 0 CUL4, ATCUL4 cullin4 (.1) AT1G69670 389 / 4e-127 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT1G26830 386 / 6e-126 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT4G02570 208 / 1e-58 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 182 / 2e-49 ATCUL2, CUL2 cullin 2 (.1) AT4G12100 152 / 2e-40 Cullin family protein (.1) AT1G43140 155 / 3e-40 Cullin family protein (.1) AT3G46910 111 / 2e-27 Cullin family protein (.1) AT1G59790 79 / 1e-15 Cullin family protein (.1) AT2G04660 62 / 5e-10 APC2 anaphase-promoting complex/cyclosome 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023306 [exp] 986 / 0 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10012835 [exp] 393 / 2e-128 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 387 / 3e-126 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 382 / 3e-124 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10036739 [exp] 382 / 3e-124 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10004334 [exp] 207 / 4e-58 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 206 / 6e-58 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 206 / 7e-58 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 206 / 7e-58 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G084400 [exp] 992 / 0 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 974 / 0 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G148300 [exp] 393 / 1e-128 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 392 / 4e-128 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.001G117200 [exp] 281 / 2e-85 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 274 / 4e-83 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 206 / 9e-58 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217300 [exp] 206 / 1e-57 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G089600 [exp] 51 / 2e-06 AT2G04660 1178 / 0.0 anaphase-promoting complex/cyclosome 2 (.1) Potri.005G027900 [exp] 42 / 0.0007 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family
Representative CDS sequence Show only first row Show all	>Lus10038504 pacid=23158298 polypeptide=Lus10038504 locus=Lus10038504.g ID=Lus10038504.BGIv1.0 annot-version=v1.0 ATGCCGATCCCATATGTTCACTCTCAGGCTGTCAATGATCTTTGTCTGCACAAGATGGGCGGAAGTCTATATCAGCGTATAGAAAAAGAGTGTGAAGCGC ACATCTCTGCAGCACTACGATCCTTGGTTGGCCAAAGCCCAGATTTGTTGGTCTTCTTGTCACTAGTGGAGAGATGCTGGCAGGACTTCTGTGATCAGAT GTTAATGATTAGGGGCATTGCATTGTATTTAGATAGAACATACGTTAAACAAACCCCAAGTGTGCGTTCACTATGGGACATGGGCTTGCAACTTTTCCGC CGACATCTTTCATCAGCTTCTGAAGTTGAGCACAAAACAGTAACTGGCCTTCTGCAGATGATTGAAAGAGAAAGATTAGGTGAAGCAGTTGATAGGACAC TCCTCAACCATCTTTTGAAGATGTTTGCAGCTCTTGGAATATATACAGAAAGCTTCGAAAGACCATTCCTTGAAGGCACATCTGAATTTTATGTTGCTGA GGGAATGCAATACATGCAGCAGTCAGATGTTCCAGATTACTTGAAGCATGTGGAGGTAAGGTTGCAGGAGGAACATGAGAGATGCTTACTTTACCTAGAT GCAAGCACTTGGAAGCCTCTAATAGCTAATGCAGAGAGACAGCTTCTTGAGCGCCATATATCAGCAATTCTCGATAAGGGGTTCACAATGCTGATGGATG GTCACAGGATTGGAGACCTCCAGAGGATGTACTCTTTGTTCTTGAGGGTCAATGCCCTTGAATCATTACGTCAAGCCCTTAGTTCATATGTTAGGAGAAC TGGGCAGGGTATTGTGATGGATGAAGAGAAGGACAAGGATATGAACCGGCCCGCTGAGCTGATTGCTAAGTTTTTGGACGAGAAGCTTCGTGCTGGGAAT AAGGGTACTTCTGAAGAGGAGTTGGAGGGTACACTTGACAAAGTCTTAGTTTTATTTAGGTTCATTCAGGGGAAAGACGTTTTTGAAGCATTTTACAAGA AGGATCTTGCGAAAAGATTATTGCTGGGTAAAAGTGCTTCTATTGATGCAGAGAAGTCTATGATATCTAAGCTCAAAACTGAGTGTGGCAGCCAATTCAC AAATAAGCTCGAAGGAATGTTCAAGGACATTGAATTATCTAAGGAGATCAACGAGTCTTTCAAACAGTCCTCTCAAGCAAGGACAAAACTTCCATCTGGA ATCGAGATGAGTGTCCATGTGTTGACAACTGGTTACTGGCCCACTTACCCACCAATGGATGTTAGGCTTCCTCATGAGCTGAATGTCTACCAGGATATTT TCAAAGAATTTTACTTGAGCAAACATAGTGGAAGGCGCTTAATGTGGCAGAATTCGCTGGGTCATTGTGTTTTGAAAGCAGAGTTCCCAAAGGGTAAAAA GGAGCTTGCAGTGTCCCTATTCCAGGTGACAAGCAAGAAAATATCTGATAAAATTTCTGCTTTTGAGTTGCAGACTGTTGTTTTGATGCTATTCAATGAT GCACAAAAGCTCACCTTTGAAGACATCAAGGACGCTACAGGCATTGAGGATAAAGAATTAAGGCGGACGCTACAATCCCTCGCATGTGGAAAAGTTCGGG TCCTGCAAAAGATGCCGAAAGGCCGGGATGTTGAGGATGGTGATTCATTCATGTTCAACGACGGATTTACTGCCCCGCTCTACCGAATCAAGGCATAG
AA sequence Show only first row Show all	>Lus10038504 pacid=23158298 polypeptide=Lus10038504 locus=Lus10038504.g ID=Lus10038504.BGIv1.0 annot-version=v1.0 MPIPYVHSQAVNDLCLHKMGGSLYQRIEKECEAHISAALRSLVGQSPDLLVFLSLVERCWQDFCDQMLMIRGIALYLDRTYVKQTPSVRSLWDMGLQLFR RHLSSASEVEHKTVTGLLQMIERERLGEAVDRTLLNHLLKMFAALGIYTESFERPFLEGTSEFYVAEGMQYMQQSDVPDYLKHVEVRLQEEHERCLLYLD ASTWKPLIANAERQLLERHISAILDKGFTMLMDGHRIGDLQRMYSLFLRVNALESLRQALSSYVRRTGQGIVMDEEKDKDMNRPAELIAKFLDEKLRAGN KGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSG IEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKHSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQVTSKKISDKISAFELQTVVLMLFND AQKLTFEDIKDATGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDGDSFMFNDGFTAPLYRIKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10038504 [exp]	0	1
AT3G45190			SIT4 phosphatase-associated fa...		Lus10021468 [exp]	4.0	0.8684
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014547 [exp]	4.6	0.8684
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	5.0	0.8928
AT2G46980			unknown protein		Lus10009259 [exp]	8.0	0.8595
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	9.9	0.8782
AT1G65440		GTB1	global transcription factor gr...		Lus10011344 [exp]	10.9	0.8799
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	16.6	0.8757
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	21.6	0.8617
AT1G27850			unknown protein		Lus10006433 [exp]	24.1	0.8737
AT5G07740			actin binding (.1)		Lus10015724 [exp]	25.8	0.8690

Compare expression of checked genes

Lus10038504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.