Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34590 656 / 0 Transketolase family protein (.1) AT1G30120 643 / 0 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT5G50850 250 / 7e-80 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G55510 198 / 8e-60 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G13450 193 / 5e-58 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT3G21500 45 / 6e-05 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT4G15560 45 / 0.0001 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023304 [exp] 774 / 0 AT2G34590 687 / 0.0 Transketolase family protein (.1) Lus10032550 [exp] 251 / 8e-81 AT5G50850 613 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10032549 [exp] 253 / 3e-79 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10043191 [exp] 258 / 3e-77 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10010324 [exp] 196 / 7e-59 AT1G55510 619 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10013401 [exp] 196 / 3e-58 AT1G55510 622 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10039361 [exp] 57 / 4e-10 AT5G50850 135 / 9e-40 MACCI-BOU, Transketolase family protein (.1) Lus10015519 [exp] 45 / 5e-05 AT4G15560 578 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 45 / 0.0001 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076500 [exp] 669 / 0 AT2G34590 671 / 0.0 Transketolase family protein (.1) Potri.004G129800 [exp] 663 / 0 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.003G166400 [exp] 255 / 8e-82 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.001G061400 [exp] 253 / 7e-81 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G222800 [exp] 193 / 7e-58 AT1G55510 632 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Potri.006G171700 [exp] 44 / 0.0002 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038505 pacid=23158197 polypeptide=Lus10038505 locus=Lus10038505.g ID=Lus10038505.BGIv1.0 annot-version=v1.0 ATGGCGACGATTTTCCAGGGATTGGGAGCCGCTGCCGCAATCACTTCCTCCACTCGCTTCCATTCCAACAAGTCCCTTCGCGGCTCCTTCCCAGAGAGGA GAAAGAGCTTGTTCGTGGTCAGATCTGAGGGCAGCTTGAATTTGAACCTGAGCTCCAATGCTGGAGCTCACAGGCTTGACCAATTGACTACCAAAGCTGT TGCTACCAAGGCGGATGCTTCTGCACCATCAAAATCTGGGCATGAACTCTTGCTTTTTGAGGCCCTGAGAGAAGGTCTAGAAGAAGAAATGGATAGAGAC GCTCGGGTTTGTGTGATGGGCGAAGATGTCGGCCACTATGGAGGTTCCTACAAGGTGACCAGAGGCCTAGCTGACAAATTCGGAGATCTCAGGGTTCTCG ACACCCCAATCGCCGAAAATTCCTTCACTGGTATGGGCATCGGAGCTGCCATGACTGGCTTACGACCAATCATCGAAGGAATGAACATGGGATTCCTCCT TCTAGCATTCAACCAGATCTCAAACAACTGCGGCATGCTCCACTACACCTCCGGCGGCCAGTTCACCATCCCCGTCGTAATTCGCGGACCCGGTGGAGTC GGGCGCCAGCTCGGAGCCGAACACTCGCAGCGTCTCGAGTCATATTTCCAATCCATCCCGGGAATCCAGATGGTCGCTTGCTCAACCCCTTACAACGCAA AGGGCTTGATGAAAGCTGCTATCCGAAGCGAGAACCCTGTGATCCTCTTCGAGCACGTCCTTCTTTACAACCTGAAGGAAAAAATCCCTGACGAAGAATA CATCTGTAACCTCGAGGAAGCCGAGATGGTTAGGCCGGGAGAGCATATTACCATTCTGACCTATTCCCGGATGAGATATCACGTGATGCAGGCTGCGAAA ACTCTTGTGGACAAGGGTTATGACCCTGAAGTGATTGACATCAGGTCTTTGAAGCCGTTCGATCTCCACACAATCGGGAACTCGGTGAAGAAGACGCATC GGGTTCTGATCGTGGAGGAATGCATGAGGACCGGAGGGATCGGTGCTAGCTTGACGGCAGCTATCAACGAGAATTTCATAGACTATTTGGATGCTCCCAT TGTGTGCTTGTCTTCGCAGGATGTGCCGACTCCATATGCCGGGACCCTGGAGGAATGGACTGTGGTGCAGCCTGCCCAGATTGTAACGGCAGTCGAGCAG CTATGCCAGTAA
AA sequence Show only first row Show all	>Lus10038505 pacid=23158197 polypeptide=Lus10038505 locus=Lus10038505.g ID=Lus10038505.BGIv1.0 annot-version=v1.0 MATIFQGLGAAAAITSSTRFHSNKSLRGSFPERRKSLFVVRSEGSLNLNLSSNAGAHRLDQLTTKAVATKADASAPSKSGHELLLFEALREGLEEEMDRD ARVCVMGEDVGHYGGSYKVTRGLADKFGDLRVLDTPIAENSFTGMGIGAAMTGLRPIIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGV GRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYICNLEEAEMVRPGEHITILTYSRMRYHVMQAAK TLVDKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFIDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ LCQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34590			Transketolase family protein (...		Lus10038505 [exp]	0	1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	4.9	0.8969
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	4.9	0.8528
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	8.1	0.8844
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10006069 [exp]	10.5	0.8722
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	11.2	0.8630
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	12.2	0.8674
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009432 [exp]	12.4	0.8459
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	21.0	0.8415
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	26.0	0.7979
AT5G14790			ARM repeat superfamily protein...		Lus10032152 [exp]	26.3	0.8105

Compare expression of checked genes

Lus10038505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.