Plant FIBer expression Database

Lus10038506 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30135 57 / 3e-11 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8 (.1)
AT2G34600 47 / 3e-07 ZIM TIFY5B, JAZ7 jasmonate-zim-domain protein 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023303
[exp]
223 / 3e-76 AT1G30135 59 / 1e-11 jasmonate-zim-domain protein 8 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G023301
[exp]
61 / 9e-13 AT1G30135 73 / 2e-17 jasmonate-zim-domain protein 8 (.1)
Potri.011G083900
[exp]
59 / 2e-11 AT1G30135 69 / 1e-15 jasmonate-zim-domain protein 8 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06200 tify tify domain
Representative CDS sequence
>Lus10038506 pacid=23158136 polypeptide=Lus10038506 locus=Lus10038506.g ID=Lus10038506.BGIv1.0 annot-version=v1.0
ATGGAAGACGACCGCCGCCCCAGCTGCAACCTGGAGCTCAGCCTCGTTTCCCCGGCGAGCTCCGACCAGCAGCACCGCCAGCAGCAGCCGATGACGATAT
TCTACGAGGGGAGGTGCTGCTGCATCCGCGACGTGACGGAGTTCCAAGCCAGAGCTATTATAATGCTGGCGAGCGTTCAAGAGCAGAGGACGACTAGTAC
GGAGAAATTAGAAGCAGTGGAGGATGATCAATCGGTGACGAGTGATCCGCCGCCGTCGGCGATCGTGGAGAGCTACCCGCCGGCGGTGAGGCAGTCGATG
AAGAGGTCGTTGCAGAGGTTCTTCCTCCAGAAACGGAAGGGCCGCGGTGGCCAGGCGGCGGCTGATCGGTCGTCGCCGTACCCGCGGCCTCCTACAACTA
GACGCAATTTGCAGAAGGAGCTAGCTAGCGTAGCTAATGGGTTTTAA
AA sequence
>Lus10038506 pacid=23158136 polypeptide=Lus10038506 locus=Lus10038506.g ID=Lus10038506.BGIv1.0 annot-version=v1.0
MEDDRRPSCNLELSLVSPASSDQQHRQQQPMTIFYEGRCCCIRDVTEFQARAIIMLASVQEQRTTSTEKLEAVEDDQSVTSDPPPSAIVESYPPAVRQSM
KRSLQRFFLQKRKGRGGQAAADRSSPYPRPPTTRRNLQKELASVANGF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G30135 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8... Lus10038506
[exp]
0 1
AT1G30135 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8... Lus10023303
[exp]
1.0 0.9610
AT1G32640 bHLH JIN1, JAI1, ZBF... JASMONATE INSENSITIVE 1, Basic... Lus10035366
[exp]
3.9 0.9154
AT5G47390 MYB myb-like transcription factor ... Lus10004384
[exp]
4.7 0.9325
AT1G19210 AP2_ERF Integrase-type DNA-binding sup... Lus10009798
[exp]
5.3 0.9121
AT1G74950 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2... Lus10008129
[exp]
5.7 0.9007
AT5G21960 AP2_ERF Integrase-type DNA-binding sup... Lus10038082
[exp]
6.3 0.9097
AT1G01260 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) ... Lus10030243
[exp]
9.2 0.8696
AT1G80840 WRKY ATWRKY40, WRKY4... WRKY DNA-binding protein 40 (.... Lus10041660
[exp]
11.0 0.9087
AT4G17880 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) ... Lus10000037
[exp]
12.3 0.8684
AT3G11760 unknown protein Lus10021254
[exp]
13.0 0.8901

Lus10038506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.