Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14420 657 / 0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT4G18360 647 / 0 Aldolase-type TIM barrel family protein (.1.2) AT3G14415 640 / 0 Aldolase-type TIM barrel family protein (.1.2.3) AT3G14130 462 / 7e-164 Aldolase-type TIM barrel family protein (.1) AT3G14150 453 / 4e-160 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023302 [exp] 705 / 0 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10005590 [exp] 640 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013725 [exp] 637 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10042495 [exp] 488 / 3e-175 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10038144 [exp] 460 / 6e-164 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10013171 [exp] 445 / 8e-157 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 440 / 1e-154 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10037208 [exp] 313 / 1e-105 AT4G18360 303 / 6e-103 Aldolase-type TIM barrel family protein (.1.2) Lus10013173 [exp] 221 / 1e-71 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065200 [exp] 658 / 0 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.001G394400 [exp] 652 / 0 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 650 / 0 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069600 [exp] 456 / 4e-161 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 454 / 2e-160 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 441 / 3e-155 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10038507 pacid=23158371 polypeptide=Lus10038507 locus=Lus10038507.g ID=Lus10038507.BGIv1.0 annot-version=v1.0 ATGGAGATTACCAACGTGACGGAGTATGAAGAAATTGCGAGGCAGAAATTGCCCAAGATGGTGTACGACTACTACGCCTCCGGTGCGGAGGATCAGTGGA CTCTCAAGGAGAACCGCAATGCCTTTTCTCGCATCCTGTTTCGGCCGAGGATTCTTGTGGATGTGAGCAAGATTGACATGACCACTACTGTTTTGGGATT CAGCGTTTCCATGCCTATCATGATTGCTCCTACCGCTATGCAGAAAATGGCTCACCCTGATGGGGAGTATGCAACAGCAAGGGCAGCTTCAGCAGCAGGC ACCATTATGACATTGTCCTCATGGGCTACATCCAGCGTTGAAGAGGTTGCTTCAACTGGTCCCGGCATTCGATTCTTCCAACTCTACGTGTACAAAGACA GGAATGTGGTTGCACAGATGGTGAAAAGAGCAGAACGAGCCGGTTTCAAGGCGATTGCACTTACTGTAGACACTCCAAGACTCGGCCGGAGGGAAGCTGA TATAAAGAACAGGTTTGCTTTGCCAAGCAATTGGACTCTAAAAAACTTCGAAGGCCTGGACTTGGGAAAAATAGACAAGACCAGTGACTCAGGATTGGCC TCCTACGTTGCTGGCCAAGTTGACCAGACGCTTAGCTGGAAGGATGTCAAGTGGCTTCAAACCATCACTTCATTGCCAATTCTAGTCAAAGGGGTGCTCA CTGCTGAAGATGCGAGGCTAGCGGTAGAAAACGGAGCTGCAGGAATCATTGTGTCCAATCACGGAGCACGTCAGCTGGATTATGTACCCGCCACCATCAC TGCTCTGGAAGAGGTAGTGAAAGCTGCACAAGGCAGAGTTCCCGTGTTCTTGGATGGAGGAGTTCGCCGAGGGACCGACGTGTTCAAGGCGCTGGCGTTG GGAGCTAGTGGTGTATTTATTGGAAGGCCGGTGGTGTTCGCATTGGCAGCGGACGGGGAAGGAGGAGTGAGGAAGGTGCTACAGATGCTGAGGGATGAGC TTGAATTGACAATGGCGTTAAGCGGATGCACTTCGCTCAAGGATATATCTCGCAACCATATTGTGACGGATTGGGACCCTCCTCGCACCCGTCCTAGCTG CAGGTTATGA
AA sequence Show only first row Show all	>Lus10038507 pacid=23158371 polypeptide=Lus10038507 locus=Lus10038507.g ID=Lus10038507.BGIv1.0 annot-version=v1.0 MEITNVTEYEEIARQKLPKMVYDYYASGAEDQWTLKENRNAFSRILFRPRILVDVSKIDMTTTVLGFSVSMPIMIAPTAMQKMAHPDGEYATARAASAAG TIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQMVKRAERAGFKAIALTVDTPRLGRREADIKNRFALPSNWTLKNFEGLDLGKIDKTSDSGLA SYVAGQVDQTLSWKDVKWLQTITSLPILVKGVLTAEDARLAVENGAAGIIVSNHGARQLDYVPATITALEEVVKAAQGRVPVFLDGGVRRGTDVFKALAL GASGVFIGRPVVFALAADGEGGVRKVLQMLRDELELTMALSGCTSLKDISRNHIVTDWDPPRTRPSCRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	2.2	0.9524
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	4.5	0.9510
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	5.7	0.9482
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	8.7	0.9474
AT2G32210			unknown protein		Lus10003815 [exp]	10.9	0.9353
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	11.2	0.9423
AT5G49710			unknown protein		Lus10015965 [exp]	12.0	0.9457
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	12.0	0.9429
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032220 [exp]	12.3	0.9351
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	13.3	0.9356

Compare expression of checked genes

Lus10038507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.