Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30190 47 / 6e-06 unknown protein AT2G34610 43 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023301 [exp] 302 / 5e-104 AT1G30190 61 / 5e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G083600 [exp] 56 / 3e-09 AT2G34610 52 / 7e-08 unknown protein Potri.004G065300 [exp] 54 / 2e-08 AT1G30190 76 / 5e-16 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10038508 pacid=23158399 polypeptide=Lus10038508 locus=Lus10038508.g ID=Lus10038508.BGIv1.0 annot-version=v1.0 ATGGATCACCTCCCACCTCCAAATATAGCACTGAACAAACCAATCGAAATCAACGGCTGGGATCGAAAACACCAATACCAGAACAAGCCACAAGGATCAT CATCACCATCATCAATAATCTCCTTGATGGCTTCTCTAATAGCCTCCCTTCTCATCATCTACATCTCCCTAGCGTATATCCACAACCCCAATTTCTTCTG GTGGCTAATCTCCAACACTTTGGTTCTCATCATCGCCGCCGATTACCCCGCGGCCCATGATCATCAACATTACGATGATGGTGATCATCTCTACGGAATG AAGAGACGCACCCACACCGGAATGCCTACGTCCGTCCGCACACGATTCCCTCCCCCTGCCCTCCTAACCCGCCGGAACAGCGCCCCTGGAGGAGGCATTG AATGGCGGTCAAACGTCAACGAGCCGGGTCAACGCTTTACGAGCATACTCAAACCGAAAGGGGCCGGGGTGGATGGGATCGAATCGGGCCAGCTTTCTCG GAGTCAATCGGAGAGACGTGGTAATAAGAAGGTGGTGATCGACGAGAGCAGAAACATCGTCATGAAATTCGAGAGGGTTGTGCCTCCTCCGCCCGATGAT GATGACTGCTTGTCTGACCACGGCGACGATGAGGACGAGGACGATAGCGATAATGAGTACGCCAAATTGTCGACCGAGGAGCTTAACAAACGGGTGGAGG ACTTCATTCATCGATTTAACACACAAATTCGTCTTCAAAACCGGATGGAGGGCTCATGA
AA sequence Show only first row Show all	>Lus10038508 pacid=23158399 polypeptide=Lus10038508 locus=Lus10038508.g ID=Lus10038508.BGIv1.0 annot-version=v1.0 MDHLPPPNIALNKPIEINGWDRKHQYQNKPQGSSSPSSIISLMASLIASLLIIYISLAYIHNPNFFWWLISNTLVLIIAADYPAAHDHQHYDDGDHLYGM KRRTHTGMPTSVRTRFPPPALLTRRNSAPGGGIEWRSNVNEPGQRFTSILKPKGAGVDGIESGQLSRSQSERRGNKKVVIDESRNIVMKFERVVPPPPDD DDCLSDHGDDEDEDDSDNEYAKLSTEELNKRVEDFIHRFNTQIRLQNRMEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30190			unknown protein		Lus10038508 [exp]	0	1
					Lus10004507 [exp]	5.8	0.7145
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Lus10023595 [exp]	8.6	0.6621
					Lus10000529 [exp]	13.7	0.5790
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	15.9	0.5790
					Lus10008001 [exp]	17.7	0.5790
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037633 [exp]	19.4	0.5790
AT4G17920			RING/U-box superfamily protein...		Lus10035368 [exp]	21.0	0.5790
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	22.4	0.5790
					Lus10005514 [exp]	23.8	0.5790
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	25.1	0.5790

Compare expression of checked genes

Lus10038508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.