Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46190 567 / 0 RNA-binding KH domain-containing protein (.1) AT4G18375 506 / 4e-173 RNA-binding KH domain-containing protein (.1.2) AT5G15270 191 / 5e-53 RNA-binding KH domain-containing protein (.1.2) AT5G53060 161 / 8e-42 RNA-binding KH domain-containing protein (.1.2) AT1G51580 139 / 2e-34 RNA-binding KH domain-containing protein (.1) AT1G14170 102 / 8e-23 RNA-binding KH domain-containing protein (.1.2.3) AT3G04610 88 / 6e-18 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT2G22600 82 / 3e-16 RNA-binding KH domain-containing protein (.1) AT5G09560 80 / 2e-15 RNA-binding KH domain-containing protein (.1) AT5G64390 80 / 3e-15 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023300 [exp] 1142 / 0 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 201 / 7e-57 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 197 / 9e-55 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 159 / 4e-41 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 154 / 1e-39 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10033557 [exp] 143 / 2e-37 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10022390 [exp] 132 / 4e-32 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 132 / 5e-32 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 122 / 2e-28 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066100 [exp] 734 / 0 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 686 / 0 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.004G123400 [exp] 205 / 4e-58 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 202 / 5e-57 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 175 / 3e-46 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 153 / 1e-39 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 144 / 2e-36 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 142 / 4e-35 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.015G011100 [exp] 134 / 7e-33 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 133 / 2e-32 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10038509 pacid=23158311 polypeptide=Lus10038509 locus=Lus10038509.g ID=Lus10038509.BGIv1.0 annot-version=v1.0 ATGGATTTCTTTTGTGCCATCCTTGGCGAAATGCAGCTCAATTGTTTAGTCTTGGGTATTGCTTCCAGGTTCGAACTGGTAACACTTGGAATGGGCGAAG GTGGTAAGCGGCCACGTCGACAAAGAGAGTACGATGAGGATAAAAAGATACATAATAAGAGACGAATAAACGACAAGGATGGAAGGGGCAACGATGAACT GGTTGTGTACAGAATACTGTGCCCAGATGAGGTTATTGGAAGCGTCATTGGTAAAAACGGGAAAGTGATAAACTCAATCAGGCAAGAAACTAGAGCCAAA GTCAAGGTGGTGGATCCGTTTCCAGGAGCCAAGGAGAGGGTCATAATCATCTATTGTTATGTCAAAGAAAAGGATGATGTTGATGTTGAAAATGGATGCA ATACTGTTACACCCTTATGTGCTGCTCAGGATGCCCTTCTTAAAGTTCATGCTGCTATCAGTAATGCAATTGCAGCTAATGTAGATCCGGAGATGGATAG GAAAGACAAGGAGGAGTGCCGAATCCTCGTTCCATCCAGCCAGTCGTCGACTGTTATCGGTAAGGCTGGGATGAGTATAAAGAAACTGAGAGGTAAAACA AGGTCCAGCATTAAAGTCATCCCGAAGGATGTGTCTGATCCTAGTCATACATGTGCTATGGATTTCGATAACTTTATCATGATATCTGGAGAGTCCGAGT CTGTGAAGAGAGCTTTATTTGCTGTTTCTGCAATCATGTACAAGTTTGGTCCTAAAGAAGTAGTTCCTCTAGAGACAACAGTGCCAGATGCTGCTCCAAG CATCATTATACCATCAGATGTCCCTATCTATTCGACAGCTGGATTATATCCAAATGCAGATCATCTTCTCCCTACTAGATCCCTTTCATCAATCATAGGT CCCACACATGTACCAGAACATCTAGGTTACGGTGATGCAAGTGGTTCATGGCCTATTTATTCATCCACCCTACCCATGATTCCTAGTTTGGGAAGTGCTG CTCGACTCGAAGAGTTAATTGTCCGGGTGTTGTGCCCGTTCAGCAAAATTGGACGTGTCATTGGCAAGGGAGGGGGTACTATTAAAAGCATAAGGCAGAC TACTGGTGCTCGTATTGAGGTTGATGATTCAAAGGTTGACTGTGATGAGTGTCTCGTAACTGTCATTGCAGCGGAGTCACCTGACGACTTGAAATCCATG GCTGTTGAAGCGGTTCTATTGCTCCAAGAAAAAATCAGCGAGGATGATGAGGATACTGTTACTATGAGGCTACTTATCACTTCTAAAGTAATAGGGTGTA TCATTGGGAGAAGTGGTTCAATTATCAGTGAAATTAGAAAGAGAACTAATGCAGATATCCGTATCTCAAAAGCTGATAAGCCAAAATGTGCAAAGGCTAA TGATGAACTTGTTGAGTTGCAAGGGGAAGTAGGTTGTGTTAGGGATGCACTTGTCCAGATTATTCTGAGGCTTAGAGAAGATGTATTAAGAGACAGAGAC AATGGTCATAGTTCTACCCCAGCTGAATCATTATACTCAGGGGCCCCTGGGCTTCCGGTCACTTCTTTCTTGCATACAATGCCTCCTATTAATCCATTGG GATATGATCGGAGAATTGAAGCTGGGCTTCTTTCCTCCAGCAGCCTTCACGGCTATGGACCTTTGTCTATTGGGGAGAATGACTACGGATCAATGTCCTC CTATTCATCATCCAAGATATATGGAGGGTTACCTCAACACTCAACTATTGAGATGTTGGTGCCTGCCAATACTGTAGGGAAAGTCTTGGGCAAAGGCGGG ACGAACATTGCCAATATTCGAAAGATATCAGGAGCAATGATTGAAATTTCTGAATCCAGGAGTGGAAGAGGTGATCGCATTGCATATATATCTGGTACAA CGGAGCAGAGAAATTCAGCTGAAAACTTGATCCGGGCATTCATGATGGCTACCTAA
AA sequence Show only first row Show all	>Lus10038509 pacid=23158311 polypeptide=Lus10038509 locus=Lus10038509.g ID=Lus10038509.BGIv1.0 annot-version=v1.0 MDFFCAILGEMQLNCLVLGIASRFELVTLGMGEGGKRPRRQREYDEDKKIHNKRRINDKDGRGNDELVVYRILCPDEVIGSVIGKNGKVINSIRQETRAK VKVVDPFPGAKERVIIIYCYVKEKDDVDVENGCNTVTPLCAAQDALLKVHAAISNAIAANVDPEMDRKDKEECRILVPSSQSSTVIGKAGMSIKKLRGKT RSSIKVIPKDVSDPSHTCAMDFDNFIMISGESESVKRALFAVSAIMYKFGPKEVVPLETTVPDAAPSIIIPSDVPIYSTAGLYPNADHLLPTRSLSSIIG PTHVPEHLGYGDASGSWPIYSSTLPMIPSLGSAARLEELIVRVLCPFSKIGRVIGKGGGTIKSIRQTTGARIEVDDSKVDCDECLVTVIAAESPDDLKSM AVEAVLLLQEKISEDDEDTVTMRLLITSKVIGCIIGRSGSIISEIRKRTNADIRISKADKPKCAKANDELVELQGEVGCVRDALVQIILRLREDVLRDRD NGHSSTPAESLYSGAPGLPVTSFLHTMPPINPLGYDRRIEAGLLSSSSLHGYGPLSIGENDYGSMSSYSSSKIYGGLPQHSTIEMLVPANTVGKVLGKGG TNIANIRKISGAMIEISESRSGRGDRIAYISGTTEQRNSAENLIRAFMMAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	0	1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	2.2	0.8367
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014244 [exp]	3.5	0.8115
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	4.5	0.8066
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	4.6	0.8120
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10014601 [exp]	5.5	0.7874
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	5.7	0.8138
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	7.9	0.7890
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	8.0	0.7943
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	10.1	0.7754
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	13.0	0.7831

Compare expression of checked genes

Lus10038509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.