Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46170 440 / 9e-156 F-box family protein (.1) AT4G18380 415 / 3e-146 F-box family protein (.1.2) AT1G30200 403 / 2e-141 F-box family protein (.1.2) AT1G78100 159 / 8e-47 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1) AT1G22220 149 / 5e-43 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023298 [exp] 508 / 0 AT5G46170 505 / 4e-179 F-box family protein (.1) Lus10041123 [exp] 138 / 1e-38 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10036451 [exp] 131 / 4e-36 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10013431 [exp] 94 / 2e-22 AT4G18380 102 / 4e-25 F-box family protein (.1.2) Lus10040978 [exp] 45 / 8e-06 AT4G18380 44 / 7e-06 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065900 [exp] 449 / 2e-159 AT5G46170 499 / 3e-177 F-box family protein (.1) Potri.011G082900 [exp] 444 / 2e-157 AT5G46170 488 / 9e-173 F-box family protein (.1) Potri.002G094600 [exp] 169 / 1e-50 AT1G78100 292 / 9e-98 auxin up-regulated f-box protein 1, F-box family protein (.1) Potri.005G166500 [exp] 149 / 6e-43 AT1G22220 295 / 1e-99 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.009G047600 [exp] 147 / 9e-42 AT4G18380 197 / 4e-60 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038511 pacid=23158117 polypeptide=Lus10038511 locus=Lus10038511.g ID=Lus10038511.BGIv1.0 annot-version=v1.0 ATGGTCGTCGGCGGAATTGCCAAGCCGTTCCAAGCTTTGGGACAATTCCTCGGTCCGAAGCGGGAGATGATCGCTTCCTCGAGGGAAGAAGACGGCGGAG AGATGGATCAGGGAGGCGTTACTCATCATTCACCTACTCAGGTACTCAAGAACTTCAACGAGATTCGCTTCCTCAGGATCGAGCTGCCTAGTGGAGAATT AGGGATTGACGATGGCGTCCTCTTGAAATGGAAGGCCGATTTCGGATCTACCTTGGACAACTGCGTCATCCTTGGGGCCGCATCAGTTATCAACAATAAT TCGAAGCAATTCTCTGCGCAGGAATGTCTCGATGTGGCTTGCTCCAACGGTAATAATAATAATGGAGATGACAACGGGAGCATACCGGAGTCGTTCTACA CAAACGGAGGGCTGAAACTGAGAGTTGTCTGGACTATAAGCTCTCTAATTGCAGCGTCGGCAAGGCATTACTTGCTGCAGCCGATAATTGCAGACCACAA GACGCTGAATAGCTTGGTGTTGACGGATGCGGATGGGCAAGGGGTGCTGTGTATGAACAGGGATCAGCTGGAGGAGCTTAGGGTGAAGCCATTGTCGGCT TCCTCTGCTTCAAAGAGGACACTTGTTCCTGCTCTGAATATGCGCCTGTGGTATGCTCCTCATTTGGAGCTTCCCAATGGGGTTGTGTTGAAAGGCGCTA CTCTTGTTGCTATTAGGCCTAGCGAGCAGACTTCCGCTAAGAAGGAAGTGTGCGATCTTTCCTGGGTTTCCACTGCTTTCGAGGATCCGTACGGTACTGC TGCGAAGATGCTTGTTAAAAGGAGGACTTACTGCTTGGAGATGAACTCTTTCTGA
AA sequence Show only first row Show all	>Lus10038511 pacid=23158117 polypeptide=Lus10038511 locus=Lus10038511.g ID=Lus10038511.BGIv1.0 annot-version=v1.0 MVVGGIAKPFQALGQFLGPKREMIASSREEDGGEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWKADFGSTLDNCVILGAASVINNN SKQFSAQECLDVACSNGNNNNGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIADHKTLNSLVLTDADGQGVLCMNRDQLEELRVKPLSA SSASKRTLVPALNMRLWYAPHLELPNGVVLKGATLVAIRPSEQTSAKKEVCDLSWVSTAFEDPYGTAAKMLVKRRTYCLEMNSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	0	1
AT1G71980			Protease-associated (PA) RING/...		Lus10006074 [exp]	5.4	0.7983
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	7.7	0.7462
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	12.2	0.7926
AT4G15470			Bax inhibitor-1 family protein...		Lus10041240 [exp]	12.6	0.7393
AT2G37035			unknown protein		Lus10026520 [exp]	12.7	0.7612
AT5G19080			RING/U-box superfamily protein...		Lus10034030 [exp]	13.5	0.7470
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	14.5	0.7909
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	15.0	0.7879
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10043431 [exp]	17.6	0.7579
AT1G22540			Major facilitator superfamily ...		Lus10009462 [exp]	24.5	0.7361

Compare expression of checked genes

Lus10038511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.