Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46160 207 / 5e-69 Ribosomal protein L14p/L23e family protein (.1.2) AT1G17560 149 / 5e-46 HLL HUELLENLOS, Ribosomal protein L14p/L23e family protein (.1) ATCG00780 105 / 2e-29 ATCG00780.1, RPL14 ribosomal protein L14 (.1) AT3G04400 41 / 7e-05 EMB2171 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2) AT2G33370 41 / 7e-05 Ribosomal protein L14p/L23e family protein (.1) AT1G04480 41 / 7e-05 Ribosomal protein L14p/L23e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023296 [exp] 248 / 3e-84 AT5G46160 232 / 1e-77 Ribosomal protein L14p/L23e family protein (.1.2) Lus10022881 [exp] 42 / 5e-05 AT1G04480 270 / 1e-94 Ribosomal protein L14p/L23e family protein (.1) Lus10011773 [exp] 42 / 5e-05 AT2G33370 270 / 2e-94 Ribosomal protein L14p/L23e family protein (.1) Lus10024943 [exp] 42 / 8e-05 AT1G04480 270 / 2e-94 Ribosomal protein L14p/L23e family protein (.1) Lus10012464 [exp] 41 / 8e-05 AT3G04400 251 / 6e-88 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2) Lus10020499 [exp] 41 / 8e-05 AT1G04480 251 / 6e-88 Ribosomal protein L14p/L23e family protein (.1) Lus10023730 [exp] 41 / 8e-05 AT2G33370 278 / 3e-98 Ribosomal protein L14p/L23e family protein (.1) Lus10042695 [exp] 41 / 9e-05 AT2G33370 273 / 8e-96 Ribosomal protein L14p/L23e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022800 [exp] 213 / 1e-71 AT5G46160 199 / 3e-66 Ribosomal protein L14p/L23e family protein (.1.2) Potri.003G096525 [exp] 57 / 5e-11 AT5G46160 62 / 5e-13 Ribosomal protein L14p/L23e family protein (.1.2) Potri.008G171200 [exp] 41 / 7e-05 AT3G04400 278 / 3e-98 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2) Potri.010G066400 [exp] 41 / 7e-05 AT3G04400 278 / 3e-98 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2) Potri.002G257500 [exp] 41 / 7e-05 AT3G04400 278 / 3e-98 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00238 [flax] [poplar] Ribosomal_L14 Ribosomal protein L14p/L23e
Representative CDS sequence Show only first row Show all	>Lus10038513 pacid=23158410 polypeptide=Lus10038513 locus=Lus10038513.g ID=Lus10038513.BGIv1.0 annot-version=v1.0 ATGGCTGCCAGTTTTGCTTCCAGATGTTCTCGTGCGGGTCGGTCGCTGTTTGGGGGACTCAGCAACAGCATCTCTAGTGCATCAAGCACATCATTTGAGA TGACTTCCAGCAATTTCCTGTATCAGCTCCAGCAAAACAGGAGTTTCATACAAATGAGGACAGTCCTGAAAGTCGCAGACAACTCTGGTGCGAAAAAGGT GATGTGCATACAAGTGCTGAAGGGGAAGAAGATAGGGGCTAAGCTAGGGGACACAATCGTGGCTTCGGTGAAAGAAGCGATGCCCAACGGTAAAGTCAAG AAAGGGAAAGTTGTGTACGGTGTGGTCGTCCGGGCTGCCATGCAGCGTGGACGTTGTGACGGGAGCGAGGTTAAGTTCGACGACAATGCTGTAGTTTTGG TCGACAAACAAGGCCAGCCGATCGGGACCAGAGTGTTCGGGCCTGTGCCGCACGAGCTCAGACAGAAGAAGCACGTCAAGATCCTTACTCTCGCTGAGCA TATTGCCTGA
AA sequence Show only first row Show all	>Lus10038513 pacid=23158410 polypeptide=Lus10038513 locus=Lus10038513.g ID=Lus10038513.BGIv1.0 annot-version=v1.0 MAASFASRCSRAGRSLFGGLSNSISSASSTSFEMTSSNFLYQLQQNRSFIQMRTVLKVADNSGAKKVMCIQVLKGKKIGAKLGDTIVASVKEAMPNGKVK KGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAEHIA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	0	1
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	2.6	0.9276
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	3.9	0.9258
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10023733 [exp]	5.7	0.9227
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	6.2	0.9033
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031979 [exp]	6.9	0.9268
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017993 [exp]	6.9	0.8826
AT5G57370			unknown protein		Lus10001311 [exp]	9.2	0.9134
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10005292 [exp]	11.4	0.8958
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	11.4	0.9206
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012017 [exp]	12.4	0.9105

Compare expression of checked genes

Lus10038513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.