Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14070 110 / 9e-32 ROXY2 Thioredoxin superfamily protein (.1) AT3G02000 101 / 2e-28 ROXY1 Thioredoxin superfamily protein (.1) AT3G21460 100 / 3e-28 Glutaredoxin family protein (.1) AT1G28480 100 / 1e-27 roxy19, GRX480 Thioredoxin superfamily protein (.1) AT4G15700 92 / 4e-25 Thioredoxin superfamily protein (.1) AT3G62950 90 / 3e-24 Thioredoxin superfamily protein (.1) AT4G15690 90 / 3e-24 Thioredoxin superfamily protein (.1) AT4G15660 90 / 3e-24 Thioredoxin superfamily protein (.1) AT4G15670 90 / 3e-24 Thioredoxin superfamily protein (.1) AT2G47870 89 / 1e-23 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023295 [exp] 190 / 3e-63 AT5G14070 123 / 5e-37 Thioredoxin superfamily protein (.1) Lus10011333 [exp] 112 / 3e-32 AT5G14070 151 / 1e-47 Thioredoxin superfamily protein (.1) Lus10041538 [exp] 111 / 3e-32 AT5G14070 134 / 3e-41 Thioredoxin superfamily protein (.1) Lus10035183 [exp] 111 / 4e-32 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1) Lus10013962 [exp] 97 / 6e-27 AT1G28480 135 / 3e-42 Thioredoxin superfamily protein (.1) Lus10039867 [exp] 94 / 2e-25 AT1G28480 127 / 7e-39 Thioredoxin superfamily protein (.1) Lus10033965 [exp] 93 / 2e-25 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1) Lus10012815 [exp] 92 / 6e-25 AT3G21460 171 / 3e-57 Glutaredoxin family protein (.1) Lus10002887 [exp] 91 / 9e-25 AT4G15690 149 / 3e-48 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G167000 [exp] 117 / 1e-34 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.001G060600 [exp] 114 / 1e-33 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.001G325800 [exp] 114 / 1e-33 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.017G017300 [exp] 100 / 1e-27 AT1G28480 132 / 3e-40 Thioredoxin superfamily protein (.1) Potri.007G134800 [exp] 100 / 1e-27 AT1G28480 141 / 9e-44 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 98 / 3e-27 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.004G049800 [exp] 94 / 2e-25 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1) Potri.008G214600 [exp] 91 / 9e-25 AT5G18600 159 / 2e-52 Thioredoxin superfamily protein (.1) Potri.010G021800 [exp] 91 / 1e-24 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.011G058800 [exp] 91 / 5e-24 AT1G28480 102 / 2e-28 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10038514 pacid=23158513 polypeptide=Lus10038514 locus=Lus10038514.g ID=Lus10038514.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCAGCGGGAAACGGCGGCGGGTCAACGACAGCCTTGGAGATGGCGGCGGAGAAGAAGAATCACTTTGGCGGCGGGTACGAGGTGGTGAGGG AGGTGGCGAGGAGCAACGCGGTGGTAGTGTTCAGCATGAGCGGCTGCTGTATGTGCACGGTGGTCAAGCGGCTCCTCTTCGGGCTCGGAGTGGGGCCCAC GATTGTTGAGCTTGACCACCTCCCTTCTTCCGACGACATCCAGACTGTCCTTTCGCGTCTCCACGGATCCAATAACGGCGGCGGTGGTGGTGGTAGTGGT ACCGTGCCGGCTGTTTTCATTGGAGGAAAATTTCTCGGTGGGATCGAGACGCTCATGGCTTGCCATATCAATGGGTCCTTGGTGCCTCTCCTCAAGGATG CTGGTGCTCTCTGGCTTTAA
AA sequence Show only first row Show all	>Lus10038514 pacid=23158513 polypeptide=Lus10038514 locus=Lus10038514.g ID=Lus10038514.BGIv1.0 annot-version=v1.0 MAAAAGNGGGSTTALEMAAEKKNHFGGGYEVVREVARSNAVVVFSMSGCCMCTVVKRLLFGLGVGPTIVELDHLPSSDDIQTVLSRLHGSNNGGGGGGSG TVPAVFIGGKFLGGIETLMACHINGSLVPLLKDAGALWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	0	1
					Lus10011249 [exp]	1.7	0.8848
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10022764 [exp]	4.8	0.7816
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	6.2	0.8846
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021319 [exp]	6.5	0.8663
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	8.1	0.8024
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	11.6	0.8298
					Lus10041470 [exp]	12.1	0.7412
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	14.0	0.7522
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	14.8	0.8549
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10000029 [exp]	14.8	0.7340

Compare expression of checked genes

Lus10038514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.