Plant FIBer expression Database

Lus10038515 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72280 624 / 0 AERO1 endoplasmic reticulum oxidoreductins 1 (.1)
AT2G38960 598 / 0 AERO2 endoplasmic reticulum oxidoreductins 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023292
[exp]
870 / 0 AT1G72280 658 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G436100
[exp]
644 / 0 AT1G72280 630 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
Potri.011G139900
[exp]
637 / 0 AT1G72280 635 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04137 ERO1 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Representative CDS sequence
>Lus10038515 pacid=23158220 polypeptide=Lus10038515 locus=Lus10038515.g ID=Lus10038515.BGIv1.0 annot-version=v1.0
ATGGGGGATTCAAAGGCTGATAGAAACAAGAGTAAGAGCGATGGTGGCCGTCGGTGGGCGGTGTTCTTTGCTATCTCTGTACTGTTCCTCGCTCTAGCTG
CTGCTTCAACTGCCGCCCCCAAGATCTCTCTCTTTGGAAAAGTCAATAAGCTCTGCACCTGCTCTTCAAGTCAGAAATATACTGGGATTGTGGAAGATTG
TTGTTGCAACTACGAGACAGCTAACCTTCTGAACGAGGAAGTGTTGTATCCGTCCCTCCAGGAGCTCGTCAAAACCCCATTCTTCCGCTATTTCAAGGCT
AAATTGTGGTGTGACTGTCCTTTCTGGGCTGATGATGGAATGTGCCGATTGAGGGATTGCAGTGTCTGTGAATGCCCTGATAATGAGTTCCCAGAATCAT
TTAAGCCGCCTTTTGGCCGTGGTCTTCCATCAGATGATCTTATCTGTCAAGAAGGAAAACCGGAGGCTGCTGTTGATCGTACCCTTGATCGTAAAGCTTT
TAGGGGTTGGACGGAGACTGATAACCCCTGGACAAATGATGATGAGACTGACAATGCTGAGATGACATATGTGAATCTTCAACTGAATCCTGAACGCTAT
ACTGGGTACACTGGACCATCAGCTAGAAGAATATGGGATGCAGTGTACTCCGAGAACTGTCCCAAATATCCATCTGAAGAACAGTGCCAAGAGGAGAGAT
TGCTGTATAAATTGATTTCCGGTCTCCACTCTTCCATCTCTATCCATATAGCTGCTGATTATCTGCTTGATGAAGAGACAAACTCGTGGGGTGAAAATTT
GACTTTGATGTATGATAGAGTCTTGAGATATCCAGAACGAGTTAGAAACTTGTACTTCACTTATCTCTTTGTTCTACGATCAGTCATGAAGACTGCAAGT
TACTTAGAACAAGCAGAGTATGACACTGGTAACCCTACCGAAGACCTAAAGGCTCATTCGTTGATCAAACAACTGCTCTATAATACAAAACTCGAAGCTG
CTTGCCCACTTCCGTTTGATGAAGCCAAACTTTGGAAAGGGCAACGAGGACCTGAACTGAAGCAGAAGATTCAAGAACAGTTCAGAAACATAAGTGCATT
AATGGATTGCGTCGGGTGTGAGAAGTGTCGACTCTGGGGAAAACTCCAGGTTCTCGGCCTTGGTACAGCATTGAAGATACTGTTCTCCGATAATGGTGAA
GAACCCTCTATCCAAACATTGCAGTTACAGCGGAATGAAGTAATAGCACTGATCAATTTACTGAATCGGCTATCAGAATCGGTGAAGTTCGTCCATGAAA
AGGGAGCGGCTGTAGAAAGAATCATGGAGGGACAGAGGGGTTTGTTAGGTGCTGCAAGTATTCTGTTGCAGAAAGTGTGGCCATTTAGTTCAAACGTTAT
TAGGTAA
AA sequence
>Lus10038515 pacid=23158220 polypeptide=Lus10038515 locus=Lus10038515.g ID=Lus10038515.BGIv1.0 annot-version=v1.0
MGDSKADRNKSKSDGGRRWAVFFAISVLFLALAAASTAAPKISLFGKVNKLCTCSSSQKYTGIVEDCCCNYETANLLNEEVLYPSLQELVKTPFFRYFKA
KLWCDCPFWADDGMCRLRDCSVCECPDNEFPESFKPPFGRGLPSDDLICQEGKPEAAVDRTLDRKAFRGWTETDNPWTNDDETDNAEMTYVNLQLNPERY
TGYTGPSARRIWDAVYSENCPKYPSEEQCQEERLLYKLISGLHSSISIHIAADYLLDEETNSWGENLTLMYDRVLRYPERVRNLYFTYLFVLRSVMKTAS
YLEQAEYDTGNPTEDLKAHSLIKQLLYNTKLEAACPLPFDEAKLWKGQRGPELKQKIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSDNGE
EPSIQTLQLQRNEVIALINLLNRLSESVKFVHEKGAAVERIMEGQRGLLGAASILLQKVWPFSSNVIR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72280 AERO1 endoplasmic reticulum oxidored... Lus10038515
[exp]
0 1
AT1G77120 ADH1, ATADH, AT... ARABIDOPSIS THALIANA ALCOHOL D... Lus10029759
[exp]
3.0 0.9791
AT2G41640 Glycosyltransferase family 61 ... Lus10031057
[exp]
4.5 0.9753
AT2G30490 REF3, CYP73A5, ... REDUCED EPRDERMAL FLUORESCENCE... Lus10027598
[exp]
6.5 0.9784
AT2G47430 CKI1 CYTOKININ-INDEPENDENT 1, Signa... Lus10029849
[exp]
7.5 0.9721
AT1G09090 ATRBOHB-BETA, A... respiratory burst oxidase homo... Lus10020644
[exp]
7.7 0.9786
AT1G72360 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYL... Lus10003601
[exp]
8.2 0.9781
AT5G19140 AtAILP1, AILP1 Aluminium induced protein with... Lus10034038
[exp]
11.4 0.9698
AT1G72360 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYL... Lus10008214
[exp]
11.5 0.9741
AT3G19615 unknown protein Lus10031599
[exp]
11.7 0.9720
AT5G54960 PDC2 pyruvate decarboxylase-2 (.1) Lus10005048
[exp]
14.0 0.9671

Lus10038515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.