Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46150 470 / 2e-167 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) AT1G54320 402 / 1e-140 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT1G16360 395 / 7e-138 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT1G79450 395 / 1e-137 ALIS5 ALA-interacting subunit 5 (.1.2) AT3G12740 394 / 2e-137 ALIS1 ALA-interacting subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023290 [exp] 669 / 0 AT5G46150 482 / 3e-172 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Lus10001762 [exp] 404 / 6e-141 AT1G54320 527 / 0.0 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10033283 [exp] 380 / 1e-131 AT1G79450 447 / 3e-158 ALA-interacting subunit 5 (.1.2) Lus10034744 [exp] 378 / 1e-130 AT3G12740 427 / 3e-150 ALA-interacting subunit 1 (.1) Lus10001834 [exp] 368 / 3e-127 AT1G54320 471 / 1e-167 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G082100 [exp] 477 / 2e-170 AT5G46150 456 / 4e-162 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Potri.017G139300 [exp] 410 / 1e-143 AT3G12740 437 / 5e-154 ALA-interacting subunit 1 (.1) Potri.004G081100 [exp] 401 / 3e-140 AT1G79450 429 / 4e-151 ALA-interacting subunit 5 (.1.2) Potri.010G173900 [exp] 396 / 5e-138 AT3G12740 512 / 0.0 ALA-interacting subunit 1 (.1) Potri.008G082100 [exp] 384 / 4e-133 AT3G12740 479 / 6e-171 ALA-interacting subunit 1 (.1) Potri.001G381500 [exp] 338 / 5e-115 AT1G79450 398 / 2e-138 ALA-interacting subunit 5 (.1.2) Potri.001G337466 [exp] 51 / 1e-08 AT1G16360 50 / 7e-09 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03381 [flax] [poplar] CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family
Representative CDS sequence Show only first row Show all	>Lus10038516 pacid=23158264 polypeptide=Lus10038516 locus=Lus10038516.g ID=Lus10038516.BGIv1.0 annot-version=v1.0 ATGGAAGTTGAAGGAGTAAATGCATCGGATGATTCCGCCTCCGTCCGATCGATTCCTATACAGTCAGGCCGACGGAAAGCTTTTCAGCAGTTCACACAGC AGACTCTCCCAGCTTGTAAGCCTGTCCTGACTCCAGCATGGGTGATGACATCATTTTTATTGTTGGGACTTACTTTTGTGCCTGTTGGACTCGTCACTCT TCGTACCTCCCGTAGTGTCGTTGAAATTGTGGAACGGTATGATGCAGACTGTGTTCCAGAGGCATATAAAGGCAACAAGATGTCGTATATTACTGACCGT TCTATCCCAAAGAATTGTTCCAGGAAATTGAAGGTGCACAAGTATATGAAAGCCCCAATTTACGTTTACTATCAACTTGACAATTACTATCAGAACCACC GACGGTATGTCAAGAGTAGAAGTGATCAGCAGCTTCTGCACGGCCTACAAACCAACGATACAAGTGCTTGTAGACCCGAAGAGTCTGTGGATAGTGGTCG TATTGTCCCATGTGGATTGATTGCGTGGAGTTTGTTCAATGATACATACACATTTTCCCGTGAGGATACGAAACTGAAAGTCAACCGGAAGAACATCGCT TGGAGAAGTGATCGAGATCACAAGTTTGGAAAGGATGTATATCCTTCCAACTTCCAAAATGGGACTATCATTGGTGGTGGAAAGCTTGATCCAAAGATTC CTCTAAGTGATCAAGAGGATCTGATTGTATGGATGCGCACGGCAGCCCTTCCTAGCTTCAGAAAGATGTACGGGCGAATCGAAGAGGATTTAGACGTGGA TGATGTTATTATTGTGGATCTGATGAACAATTATAACACGTACAGTTTTGGTGGGAAGAAGAAGCTTGTTCTTTCGACATCGAGCTGGTTGGGAGGAAGG AATGACTTCATGGGGTTTGCGTTCATGTTTGTTGGCTCGTCATCCATATTTCTATCCATGGTGTTCATGCTTCTTCATGTCAAAAGTCCCAGGACTTATG GAGACGCAGCTTACTTGTCCTGGAAAAAGGGCAATTCTGGTTGA
AA sequence Show only first row Show all	>Lus10038516 pacid=23158264 polypeptide=Lus10038516 locus=Lus10038516.g ID=Lus10038516.BGIv1.0 annot-version=v1.0 MEVEGVNASDDSASVRSIPIQSGRRKAFQQFTQQTLPACKPVLTPAWVMTSFLLLGLTFVPVGLVTLRTSRSVVEIVERYDADCVPEAYKGNKMSYITDR SIPKNCSRKLKVHKYMKAPIYVYYQLDNYYQNHRRYVKSRSDQQLLHGLQTNDTSACRPEESVDSGRIVPCGLIAWSLFNDTYTFSREDTKLKVNRKNIA WRSDRDHKFGKDVYPSNFQNGTIIGGGKLDPKIPLSDQEDLIVWMRTAALPSFRKMYGRIEEDLDVDDVIIVDLMNNYNTYSFGGKKKLVLSTSSWLGGR NDFMGFAFMFVGSSSIFLSMVFMLLHVKSPRTYGDAAYLSWKKGNSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10038516 [exp]	0	1
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	3.7	0.7085
AT1G63220			Calcium-dependent lipid-bindin...		Lus10029565 [exp]	11.7	0.6793
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	59.1	0.6060
AT1G21830			unknown protein		Lus10025658 [exp]	68.8	0.5977
AT5G45290			RING/U-box superfamily protein...		Lus10030117 [exp]	77.4	0.5942
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023180 [exp]	84.4	0.5396
AT1G23300			MATE efflux family protein (.1...		Lus10036852 [exp]	104.2	0.5022
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10005477 [exp]	174.0	0.5183
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017758 [exp]	220.5	0.5047

Compare expression of checked genes

Lus10038516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.