Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17210 812 / 0 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) AT1G48950 211 / 2e-58 C3HC zinc finger-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023288 [exp] 1744 / 0 AT1G17210 848 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Lus10038947 [exp] 209 / 2e-57 AT1G48950 487 / 2e-166 C3HC zinc finger-like (.1) Lus10027238 [exp] 209 / 4e-57 AT1G48950 489 / 8e-167 C3HC zinc finger-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081200 [exp] 1266 / 0 AT1G17210 905 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Potri.015G052400 [exp] 212 / 2e-57 AT1G48950 409 / 2e-133 C3HC zinc finger-like (.1) Potri.012G058550 [exp] 56 / 1e-07 AT1G48950 159 / 1e-42 C3HC zinc finger-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0417 [flax] [poplar] BIR-like PF07967 [flax] [poplar] zf-C3HC C3HC zinc finger-like
Representative CDS sequence Show only first row Show all	>Lus10038518 pacid=23158243 polypeptide=Lus10038518 locus=Lus10038518.g ID=Lus10038518.BGIv1.0 annot-version=v1.0 ATGAAGGAAGAAGCTATCAGCTCCGCAGGAACCATGGATCCCACTCCTGCAGCTGCAAGTTCTGCTGGGGCATCCTCACGTGCTGGACCTGTCAGTGGTG GCAAAAAGGAGAAATCCAGCAATGCTTTTGATTCCAAGTTTGCTTCTTTGACCGGCATGGGTTCAAAACTTCCCGGGACCTCTAATCTTGGGGCAAGACT TTCATGCAGGCCATGGGAAAGAGGAGATTTGTTAAGGCGGTTAGCTACATTTAAACCATCAAGTTGGTATGGAAAACCTAAGGCTACCAGTTCATTGGCA TGTGCTCAAAGAGGTTGGACGAATGTTGATGTTGACAAAATTGTCTGTGAATCCTGTGGTGCATCTCTGAGTTTTCTGTTGCTACCGTCATGGACCAACA CTGAAATTCAAGATGCTGAAGAAGCCTTCGCAAAGCAGTTGGATACTGGCCATGAAGTGAACTGTCCTTGGAGAGGACATAGCTGCCTGGAAAGCTTAGT GCAGTTCCCGCCTACTCCACAGTCTGCTTTGATTGGTGGATACAAGGACAGATGTGATGGACTTCTGCAATTTCAGTTACTTCCTATTGTTGCTGCATCT GCAGTCGAGTTGATGCGTGTCTCACGAGGTCCACTCATAGATCGCTTTTTATCCCAGTCCCAAAGTCTTACCATCGGAGAAGATCAAAAGCCAGAAAACA TTCAAGAACCTGGAGATGGACCTCTCTATCTATATTATCGGGCCCAAAGGCTTATCAGTCTTTGTGGATGGGAACCAAGATGGCTTGCAAATGTTCAGGA CTGTGAAGAACATTCTGCTCAATCTGCTCGAAATGCATGGTCTTTTGGGCCTGCTATGGCACAGGTCCATCCTTCACGTGGACTGAGCAATAAGTCATAT TCTGCTTCAGGCAGAAAAGACAATGGAAAGAGTAAAATGGTTGCTGCCGAGTCTATATGTGATTCTAGGTCACCTTTATTAGATTGCAGTTTATGTGGCG CCACCGTGAGAATACTTGATTTCCTGACGGTTTCTCGCCCTGCACGTTTTGTTCCAAATGATCTTCCCGATGGAAGCAAAAAACTGACATTAACACGTGG AGTGAGTGCTGCTAGTGGAATTAGTGGTTGGATTGCAGCTGATGATGCAGATAAAGAACAGACTGAAGATCGTGATGAAGTAGCTACAACAAATAAGGGA AAATTGCCGCAGAATGCAGATGTTGATTTGAATCTCACAATGGCTGGGGGTCTTTCTTTTATTCCGTTGGACAGGATGATGATGGCTGATAATAATCATG ATGTGGATTTGGGGAGAGATCTAATGATTGGTCAACCTGCTGGCAGTGAGGTTGGTGATCGTGCTGCTTCATTTGAGTCTCGGGGGCCAAGTTCTCGGAA GAGGAGCTTGGAGATAGGTGGGAGCTCAGATAATAGGCCACATTTAATTCATCCAGCTGATAGTGTTGAAGGAACTGTCATTGATCGTGATGGTGATGAA GTTACAGATGGGAGGCAGTTTTCTGCTGGACCTTCAAAACGTGCTCGTGATACTGAATTTTTTGAGTCCCACAGTTCATATCCAAGATACTCATCTGGTG CTGGTCCTAGTCATTCAGTTGGTATTGAAATTAATGTAGACGGAAACAGAGTTGGTTCTTTTCGTCGAAATACTGACCATGTTGGAGGAGCCCCATCTAC TAGAGATTCAACACGTGCATCATCTGTCATTGCGATGGATACTGTTGGTAATGGTGGAGATGATGACTCTATGGAAAGTGTTGAAAATTATCCAGGGGAT GTTGATGATGTCCATTTACCATCTTCAAGTACATATGGGAACATAGACATGAATGAAACTTCGGAACTGAACAATAGCAATCAGGCGCAGCTAAGTATCG GCTTCCGACCTGCCAATGAAGTGGCACCAGGGGAAATGGGTGTCAGTAGTACCAATGACGGTGATGACATTTTTAATGCTGAAACCGTAACTGCTCAGGC AAGGGATGGATTTAGTTTTGGGGTCAGTGGAGGTAGTGTTGGTATGTGTGCAAGCCATGAAGCTGAAATTCATGGAGCTGATTTCTCAGTTCATAGAGCG GAGAGTGTAGTCGGTGACATGGAACCCAGAGTGGATGATGTTGAAAACCAAGGTCAGACTGGCGAGTCAGCCCCTGATCCTGGTCTAACGGATGAGGTTG TTCCCGATGATGTGAATAGGGAAGATCCTCATGGGGATAGCCAGGAGTTGCTCTCCAGATCTGTTGAAAGGGCTGATAGTGGCTCAAAAATAGATTGTTC AACTAAGGCAGACTCTGTTGGAAGCGGAGAAAAGGCAAGCAGGAGCTGTAAGATATTAACAGGAGAAAATGCCCACCCTTCTCTTTCTTGCAATGCAGTC ATTGATTCTGGTTGTGGAACAGCCCCTAACACGGGTAAAAAAGCTGGTAATTCCTCATCAACAAACAACGGTACTTGCATGGAATCAGACTATGCAGTTG CCAATGGGATAGATCCTCCGAAGGGTGAAAGCAACTATGAGGAGCCAGTGGAGTTCGATCCAATTATTCACCACAATGAGTTCTGTCCATGGGTGAATGG AAATGTTGCTGCTGCTGGCGTCAGTAGCTCTGGATCTGGAGGCAGTATCGACACGGAAGTGCTGTGTGGGTGGCAGCTCACTTTGGATGCTCTCGATGCA TTTGGATCATTGGCTAATTATGCAATTCAAACAGGACAGTCTGAATCAGCAGCATCTTTGTACAAGGATGATAATCAAACTCCTGGGCAAAAGCTTATTC GGCGACATTCGATGAGCAGAAGCCATGGTCAGCAATGA
AA sequence Show only first row Show all	>Lus10038518 pacid=23158243 polypeptide=Lus10038518 locus=Lus10038518.g ID=Lus10038518.BGIv1.0 annot-version=v1.0 MKEEAISSAGTMDPTPAAASSAGASSRAGPVSGGKKEKSSNAFDSKFASLTGMGSKLPGTSNLGARLSCRPWERGDLLRRLATFKPSSWYGKPKATSSLA CAQRGWTNVDVDKIVCESCGASLSFLLLPSWTNTEIQDAEEAFAKQLDTGHEVNCPWRGHSCLESLVQFPPTPQSALIGGYKDRCDGLLQFQLLPIVAAS AVELMRVSRGPLIDRFLSQSQSLTIGEDQKPENIQEPGDGPLYLYYRAQRLISLCGWEPRWLANVQDCEEHSAQSARNAWSFGPAMAQVHPSRGLSNKSY SASGRKDNGKSKMVAAESICDSRSPLLDCSLCGATVRILDFLTVSRPARFVPNDLPDGSKKLTLTRGVSAASGISGWIAADDADKEQTEDRDEVATTNKG KLPQNADVDLNLTMAGGLSFIPLDRMMMADNNHDVDLGRDLMIGQPAGSEVGDRAASFESRGPSSRKRSLEIGGSSDNRPHLIHPADSVEGTVIDRDGDE VTDGRQFSAGPSKRARDTEFFESHSSYPRYSSGAGPSHSVGIEINVDGNRVGSFRRNTDHVGGAPSTRDSTRASSVIAMDTVGNGGDDDSMESVENYPGD VDDVHLPSSSTYGNIDMNETSELNNSNQAQLSIGFRPANEVAPGEMGVSSTNDGDDIFNAETVTAQARDGFSFGVSGGSVGMCASHEAEIHGADFSVHRA ESVVGDMEPRVDDVENQGQTGESAPDPGLTDEVVPDDVNREDPHGDSQELLSRSVERADSGSKIDCSTKADSVGSGEKASRSCKILTGENAHPSLSCNAV IDSGCGTAPNTGKKAGNSSSTNNGTCMESDYAVANGIDPPKGESNYEEPVEFDPIIHHNEFCPWVNGNVAAAGVSSSGSGGSIDTEVLCGWQLTLDALDA FGSLANYAIQTGQSESAASLYKDDNQTPGQKLIRRHSMSRSHGQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	0	1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	5.1	0.8678
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10020214 [exp]	5.7	0.8555
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10042734 [exp]	7.9	0.8646
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	10.0	0.8354
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10012940 [exp]	11.0	0.8273
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	12.6	0.8518
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10040703 [exp]	17.1	0.7312
AT1G69020			Prolyl oligopeptidase family p...		Lus10026683 [exp]	18.5	0.8249
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	19.0	0.7930
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	19.6	0.8425

Compare expression of checked genes

Lus10038518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.