Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30300 316 / 1e-108 Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT4G03610 256 / 2e-85 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2) AT3G13800 125 / 1e-33 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023286 [exp] 379 / 4e-133 AT1G30300 527 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10004844 [exp] 131 / 5e-36 AT3G13800 530 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081600 [exp] 316 / 2e-108 AT1G30300 506 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.003G036800 [exp] 129 / 6e-35 AT3G13800 515 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10038519 pacid=23158144 polypeptide=Lus10038519 locus=Lus10038519.g ID=Lus10038519.BGIv1.0 annot-version=v1.0 ATGGACAACGGCAATGCTCTTAACGGCTCATCCAGCAATGGATCGGCCCTCATTTTCCTCGGCACTGGATGTTCCAGCGCCATCCCCAATATAATGTGTC TGATCCAGCCTTCCGATCCTCCCTGTCGCGTTTGCTCTCAGGCGCTTTCGATCCCGCCGGATCAAAACCCTAATTACAGGTGCAATACTTCTCTTCTCAT AGATTACTGTCCGGGGGGAGACGGGAAGCACAGTTATATATTGATTGATGTTGGGAAGACGTTTAGGGAGCAAGTTCTTCGGTGGTTCACTTTCCATAAG ATTCCTCGGGTGGATTCTATAATCTTGACCCATGAACATGCTGATGCAGTCCTTGGCCTTGATGATGTACGAACCGTGCAGCCATTTAGTCCAATAAACG CTATTGATCCAACTCCTATTTTTCTGAGTGGACATGCTATGGAAAGCATTGCAGTGAAATTCCCTTACTTAGTACAGAAGAAATTGAAGGAAGGCCAAGA AATAAGACGAGTGGCACAGCTGGACTGGACAATTATTGAGGAAGACTGTCAGAAACCGTTTGTTGCTTCTGGCCTACAAATTTTTCCTTTGCCTTCTCTT GAAGCAGTGAAGAGATTGTTCCCGAAACGGGCTCTTTTGATAGGAATGACTCATGAGCTTGATCATCACAAGGACGGTGAATATCTAGAAGAGTGGTCTA AAAGGGAAGGAATACCAGTACAGTTTGCACACGATGGGTTAAGAGTCCCCGTAGACTTATGA
AA sequence Show only first row Show all	>Lus10038519 pacid=23158144 polypeptide=Lus10038519 locus=Lus10038519.g ID=Lus10038519.BGIv1.0 annot-version=v1.0 MDNGNALNGSSSNGSALIFLGTGCSSAIPNIMCLIQPSDPPCRVCSQALSIPPDQNPNYRCNTSLLIDYCPGGDGKHSYILIDVGKTFREQVLRWFTFHK IPRVDSIILTHEHADAVLGLDDVRTVQPFSPINAIDPTPIFLSGHAMESIAVKFPYLVQKKLKEGQEIRRVAQLDWTIIEEDCQKPFVASGLQIFPLPSL EAVKRLFPKRALLIGMTHELDHHKDGEYLEEWSKREGIPVQFAHDGLRVPVDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	0	1
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	3.6	0.9101
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	6.8	0.9043
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	7.5	0.8671
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10039696 [exp]	7.7	0.8660
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	8.5	0.9005
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	8.7	0.9004
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	9.2	0.8956
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	11.3	0.8944
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	12.0	0.8891
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	12.3	0.8580

Compare expression of checked genes

Lus10038519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.