Plant FIBer expression Database

Lus10038520 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023285
[exp]
461 / 1e-166 ND /
Lus10002102
[exp]
119 / 2e-34 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G081701
[exp]
229 / 3e-74 ND /
PFAM info
Representative CDS sequence
>Lus10038520 pacid=23158310 polypeptide=Lus10038520 locus=Lus10038520.g ID=Lus10038520.BGIv1.0 annot-version=v1.0
ATGGCGTGTTTTCTTCCTTTGAATAACAAGAGTCTGGAGATCAGCTTCATCGCCCTCCGGCCGACCGTCGTCATCGTCGATGAAGCAGTCGATGCCCTCA
ACCATTTCTCTTCCGCCACTCTCGATATGGGCTGCGTCGTCAATTGCATCCTCAAGAGCATCCATGGCAACATCATCCTATGGTATGGAGCCTGGAGTAA
GAAATCCACTCAGAACAAATATCTCCTTACTGCTTCCATTGAATCCAAGCTGGCAAAGATGCTGTCCGGGAAGGCAATAGTGATGGAGCTCGGCTTCTAC
GACGCCTACGCCGGAGAAACCAAAGACGGCCGCTCGTCCGCCGCCGCCGCAAGATTCTCCACGGGAGACGCCGTCTCTATGTGCGTGGTGGTTCCCAAAT
CGGTGGGACCCGCCAAATGCTGCGCCTCCTACGACGACTTGTCGTACGCGAATTTAGCGCTGTTCAGATCCAGATTCCCGACGATGAAAGGCGCGTCTGC
CGGAGTGTGCTTGGGGTGCCCGACCTTGCCTCGATTGGCGTGCTTCTACGTCTGGACTTCTTTGCGCGCGTGCTACTCGTGGCTTCTCAACTCCGATGGC
CGGAGAAGCGCCGATGGACTCTGCCTCGACGTCAAGTACGACATTTTCACGGTGGCTTCCGTTTGCGATGAGTGGAGCCGGTTACCCGAACCGGAACAGG
AACCTACTCGGTGGGTCGATTCGGATGCGGTGGTAGCCAAGAAAAATCAACGTTCCATCTGA
AA sequence
>Lus10038520 pacid=23158310 polypeptide=Lus10038520 locus=Lus10038520.g ID=Lus10038520.BGIv1.0 annot-version=v1.0
MACFLPLNNKSLEISFIALRPTVVIVDEAVDALNHFSSATLDMGCVVNCILKSIHGNIILWYGAWSKKSTQNKYLLTASIESKLAKMLSGKAIVMELGFY
DAYAGETKDGRSSAAAARFSTGDAVSMCVVVPKSVGPAKCCASYDDLSYANLALFRSRFPTMKGASAGVCLGCPTLPRLACFYVWTSLRACYSWLLNSDG
RRSADGLCLDVKYDIFTVASVCDEWSRLPEPEQEPTRWVDSDAVVAKKNQRSI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10038520
[exp]
0 1
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Lus10012212
[exp]
1.0 0.9690
AT4G28400 Protein phosphatase 2C family ... Lus10008556
[exp]
2.0 0.9615
AT5G51970 GroES-like zinc-binding alcoho... Lus10031660
[exp]
3.0 0.9615
AT5G52430 hydroxyproline-rich glycoprote... Lus10032276
[exp]
3.2 0.9491
AT4G21380 ARK3 receptor kinase 3 (.1) Lus10033743
[exp]
4.5 0.9648
AT3G19615 unknown protein Lus10042265
[exp]
4.7 0.9489
AT1G76070 unknown protein Lus10005623
[exp]
5.0 0.9377
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10019991
[exp]
7.3 0.9521
AT5G60600 HDS, ISPG, CSB3... CONSTITUTIVE SUBTILISIN 3, CHL... Lus10021480
[exp]
7.4 0.9596
AT2G19500 ATCKX2, CKX2 cytokinin oxidase 2 (.1) Lus10031200
[exp]
7.5 0.9254

Lus10038520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.