Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30320 119 / 9e-31 Remorin family protein (.1) AT2G02170 60 / 3e-10 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023284 [exp] 441 / 8e-155 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10041239 [exp] 44 / 3e-05 AT1G67590 72 / 6e-15 Remorin family protein (.1.2) Lus10015817 [exp] 41 / 0.0006 AT1G67590 280 / 5e-92 Remorin family protein (.1.2) Lus10036997 [exp] 39 / 0.0007 AT1G67590 51 / 1e-08 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358600 [exp] 154 / 2e-43 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.010G098000 [exp] 52 / 1e-07 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.010G056800 [exp] 40 / 0.0008 AT1G67590 253 / 8e-82 Remorin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038521 pacid=23158465 polypeptide=Lus10038521 locus=Lus10038521.g ID=Lus10038521.BGIv1.0 annot-version=v1.0 ATGGAGTACGAGCGGATACACAAAGTACAGAGTGGAATCATATCTCCGAGTAAGCTGAGGATGAAGCTAATGGGACCTCACCACCAAGTGAGAAGACAAC AAGAAGAAGCTTCAAATTCCACTTCTTCACCATCTTCTCCTTCTTCCAGAGTTGTTGATGATGATGCCACTGATTTTGTTCGCAGCAGCTTGCTTGACTC CAACATTGCAGATCTCGTCCATGAGGTTGGGGAAGATTCTTCCTCAGAAGTGACTCGCCAGCAGCAAAATAGCAGCAACGATTTGGATCATGCTAACATG CAGCTGATGAGAAGTGAGAGTGTGAACCCAAATGGTGTGCACAACAACTTGATGAGGGTAGTGGGATCAGAAGATGAGAATCCAGGCTATGACAGCTCGT CGAGCTTCGAGTTCCAGAAGGAGAGATCATATCATCATAATCATCATCATCAGTTCACAAGGTCATTGTCTAGGCCTATGTCATCCAAGTGGAATGATGC TGAGAAATGGATAATCAACAAGCAGAATGTGGTACCAAGGAAGAATGGCTTCTTACATAACCAGGGTAGTAATTATAATCGGATGGGTCGGGTTGCTCCC GAGCTAGTAGCAACAAGTACTACTAAGCTTGTGGACTTTTGTCAGACTAATGGTTCACAAGTTGGGTTTGAGAGTTCTTCTTCCTTTACTGCACCTGGAA CTCCTTCCCTCTCCGGCCAAGCATACGGAGGAATAGATCTAAAGGAGGTGGATCAAAGGTGGATCAAGCTGTAG
AA sequence Show only first row Show all	>Lus10038521 pacid=23158465 polypeptide=Lus10038521 locus=Lus10038521.g ID=Lus10038521.BGIv1.0 annot-version=v1.0 MEYERIHKVQSGIISPSKLRMKLMGPHHQVRRQQEEASNSTSSPSSPSSRVVDDDATDFVRSSLLDSNIADLVHEVGEDSSSEVTRQQQNSSNDLDHANM QLMRSESVNPNGVHNNLMRVVGSEDENPGYDSSSSFEFQKERSYHHNHHHQFTRSLSRPMSSKWNDAEKWIINKQNVVPRKNGFLHNQGSNYNRMGRVAP ELVATSTTKLVDFCQTNGSQVGFESSSSFTAPGTPSLSGQAYGGIDLKEVDQRWIKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	0	1
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	1.0	0.7676
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10005836 [exp]	2.0	0.7546
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10011548 [exp]	9.8	0.6920
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10012421 [exp]	13.5	0.7231
AT3G25840			Protein kinase superfamily pro...		Lus10035031 [exp]	13.8	0.6149
AT3G25840			Protein kinase superfamily pro...		Lus10021688 [exp]	15.2	0.6850
AT3G56720			unknown protein		Lus10027280 [exp]	25.3	0.6358
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	28.0	0.6044
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	30.4	0.6057
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	33.0	0.6591

Compare expression of checked genes

Lus10038521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.